miRNA display CGI


Results 141 - 160 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 117632 0.73 0.539157
Target:  5'- ---cGCGGGCCGCCgGGCGcGGCgggGUCGCg -3'
miRNA:   3'- aaacUGCUCGGCGG-CUGC-CUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 117349 0.72 0.630027
Target:  5'- --cGGCG-GCCGCCGACGcgguggggcGGCcgCGCc -3'
miRNA:   3'- aaaCUGCuCGGCGGCUGC---------CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 117186 0.71 0.650424
Target:  5'- --cGGCGAGgCGCuCGACGGgacccGCGUCGg -3'
miRNA:   3'- aaaCUGCUCgGCG-GCUGCC-----UGUAGCg -5'
21439 5' -56 NC_004812.1 + 116756 0.66 0.913017
Target:  5'- -aUGGCgGAGCCccggccccccgcaccGCCuACGGGCA-CGCg -3'
miRNA:   3'- aaACUG-CUCGG---------------CGGcUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 116602 0.69 0.769161
Target:  5'- ---cGCGGGCCGCCG-CGucUGUCGCg -3'
miRNA:   3'- aaacUGCUCGGCGGCuGCcuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 116499 0.71 0.660604
Target:  5'- --gGGCcggGGGUCGCgGACGGACG-CGCg -3'
miRNA:   3'- aaaCUG---CUCGGCGgCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 116464 0.66 0.916509
Target:  5'- -cUGugG-GUCGCggCGGCGGAUAgcuUCGCc -3'
miRNA:   3'- aaACugCuCGGCG--GCUGCCUGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 116438 0.66 0.910642
Target:  5'- --gGACG-GCCuGCgGgGCGGcCGUCGCg -3'
miRNA:   3'- aaaCUGCuCGG-CGgC-UGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 116156 0.67 0.884851
Target:  5'- --aGACGGGCCGCCcGuACGccccgcucuGCGUUGCg -3'
miRNA:   3'- aaaCUGCUCGGCGG-C-UGCc--------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 116148 0.68 0.805636
Target:  5'- --gGGCGGGCCacaggGCCGcgGCGcGGCAUCGg -3'
miRNA:   3'- aaaCUGCUCGG-----CGGC--UGC-CUGUAGCg -5'
21439 5' -56 NC_004812.1 + 115454 0.68 0.839617
Target:  5'- -cUGGCG-GCgCGCCGcUGGGC-UCGCc -3'
miRNA:   3'- aaACUGCuCG-GCGGCuGCCUGuAGCG- -5'
21439 5' -56 NC_004812.1 + 115270 0.66 0.910642
Target:  5'- --gGACucgaGGCCGUCGugGG-CGUCGa -3'
miRNA:   3'- aaaCUGc---UCGGCGGCugCCuGUAGCg -5'
21439 5' -56 NC_004812.1 + 114477 0.66 0.891641
Target:  5'- --gGGCGuGGCCGCCGggggaagggcgGCGGGCGaCGg -3'
miRNA:   3'- aaaCUGC-UCGGCGGC-----------UGCCUGUaGCg -5'
21439 5' -56 NC_004812.1 + 113950 0.66 0.916509
Target:  5'- -gUGACGuG-CGCCuggGAUGG-CGUCGCg -3'
miRNA:   3'- aaACUGCuCgGCGG---CUGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 113761 0.69 0.769161
Target:  5'- -cUGGCGcGCCuGCCGACGGcGCcaagCGCc -3'
miRNA:   3'- aaACUGCuCGG-CGGCUGCC-UGua--GCG- -5'
21439 5' -56 NC_004812.1 + 113511 0.66 0.90454
Target:  5'- --cGugGAgGCCGUggccuCGGCGGACGagaCGCu -3'
miRNA:   3'- aaaCugCU-CGGCG-----GCUGCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 113454 0.71 0.660604
Target:  5'- ----cCGGGCCGCCG-CGG-UGUCGCg -3'
miRNA:   3'- aaacuGCUCGGCGGCuGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 113080 0.68 0.805636
Target:  5'- ---aGCGAGCCGCgacaccgccgCGGCGGACccaCGCc -3'
miRNA:   3'- aaacUGCUCGGCG----------GCUGCCUGua-GCG- -5'
21439 5' -56 NC_004812.1 + 113031 0.78 0.328457
Target:  5'- --gGGCGGGCgCGCCgGACGGACGgcCGCg -3'
miRNA:   3'- aaaCUGCUCG-GCGG-CUGCCUGUa-GCG- -5'
21439 5' -56 NC_004812.1 + 112993 0.67 0.884851
Target:  5'- --cGGCGccgcGGCCGCCGAggcagaGGACGcagaCGCg -3'
miRNA:   3'- aaaCUGC----UCGGCGGCUg-----CCUGUa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.