Results 61 - 80 of 515 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21439 | 5' | -56 | NC_004812.1 | + | 32601 | 0.74 | 0.519486 |
Target: 5'- -gUGuACGGGUcguaggCGCCG-CGGGCGUCGCa -3' miRNA: 3'- aaAC-UGCUCG------GCGGCuGCCUGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 47607 | 0.73 | 0.529288 |
Target: 5'- --cGAcccCGAGCgCGCCGACGGGC-UCGg -3' miRNA: 3'- aaaCU---GCUCG-GCGGCUGCCUGuAGCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 138960 | 0.73 | 0.579194 |
Target: 5'- --gGGCGAGCCGCCGGCGaccgaagccccGGCAcCGa -3' miRNA: 3'- aaaCUGCUCGGCGGCUGC-----------CUGUaGCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 142204 | 0.73 | 0.579194 |
Target: 5'- --gGGCuGGCCGCCGGCGu-CGUCGUg -3' miRNA: 3'- aaaCUGcUCGGCGGCUGCcuGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 16136 | 0.73 | 0.579194 |
Target: 5'- --cGACGcAGCUGCgCGACcgGGACAUCGa -3' miRNA: 3'- aaaCUGC-UCGGCG-GCUG--CCUGUAGCg -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 128261 | 0.72 | 0.589313 |
Target: 5'- --cGGCGGGCCa---GCGGACGUCGCa -3' miRNA: 3'- aaaCUGCUCGGcggcUGCCUGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 15181 | 0.72 | 0.589313 |
Target: 5'- -gUGGCGcGCCGCCcucCGGGCcUCGCu -3' miRNA: 3'- aaACUGCuCGGCGGcu-GCCUGuAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 61047 | 0.72 | 0.589313 |
Target: 5'- --cGGCGAGaCCGCC-ACGucGGCGUCGCc -3' miRNA: 3'- aaaCUGCUC-GGCGGcUGC--CUGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 66664 | 0.72 | 0.599463 |
Target: 5'- --aGGCGcGCCGCCGcucGCGGGCcccGUCGUc -3' miRNA: 3'- aaaCUGCuCGGCGGC---UGCCUG---UAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 45727 | 0.72 | 0.609637 |
Target: 5'- --gGACGGccuGCCGCCgGGCGGGCucCGCg -3' miRNA: 3'- aaaCUGCU---CGGCGG-CUGCCUGuaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 122728 | 0.73 | 0.579194 |
Target: 5'- -gUGACGGGCCgGCCcaugcgGGCGGGCGggagagggCGCg -3' miRNA: 3'- aaACUGCUCGG-CGG------CUGCCUGUa-------GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 107428 | 0.73 | 0.579194 |
Target: 5'- --aGGCccaccGGCCGCgCGGCGGcCGUCGCg -3' miRNA: 3'- aaaCUGc----UCGGCG-GCUGCCuGUAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 117632 | 0.73 | 0.539157 |
Target: 5'- ---cGCGGGCCGCCgGGCGcGGCgggGUCGCg -3' miRNA: 3'- aaacUGCUCGGCGG-CUGC-CUG---UAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 129116 | 0.73 | 0.553076 |
Target: 5'- --cGGCGAggagcucuugcgcuuGCgCGCCGGCGGGCG-CGCg -3' miRNA: 3'- aaaCUGCU---------------CG-GCGGCUGCCUGUaGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 148905 | 0.73 | 0.559075 |
Target: 5'- --gGGCGAGCgucCGgCGACGGGCGUCcgGCg -3' miRNA: 3'- aaaCUGCUCG---GCgGCUGCCUGUAG--CG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 150666 | 0.73 | 0.566096 |
Target: 5'- --gGGCgGAGCCGCCGGucgcccccgcgcucCGGGCggcGUCGCg -3' miRNA: 3'- aaaCUG-CUCGGCGGCU--------------GCCUG---UAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 55621 | 0.73 | 0.569112 |
Target: 5'- --aGGCGguccgcguacAGCCGCCGgcgcucGCGGACGUcCGCg -3' miRNA: 3'- aaaCUGC----------UCGGCGGC------UGCCUGUA-GCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 101337 | 0.73 | 0.569112 |
Target: 5'- --aGGCGcucGCCGCagaGGCGGGCGuUCGCg -3' miRNA: 3'- aaaCUGCu--CGGCGg--CUGCCUGU-AGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 51396 | 0.73 | 0.579194 |
Target: 5'- --aGGCGccGGCCGCCGGCGcGC-UCGCc -3' miRNA: 3'- aaaCUGC--UCGGCGGCUGCcUGuAGCG- -5' |
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21439 | 5' | -56 | NC_004812.1 | + | 96784 | 0.73 | 0.579194 |
Target: 5'- --cGGCGgguucgcaccGGCCGCUGGCGGGCGaacccgCGCg -3' miRNA: 3'- aaaCUGC----------UCGGCGGCUGCCUGUa-----GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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