miRNA display CGI


Results 121 - 140 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 127504 0.7 0.710995
Target:  5'- --gGGCGGGucCCGCCGGCGG---UCGCu -3'
miRNA:   3'- aaaCUGCUC--GGCGGCUGCCuguAGCG- -5'
21439 5' -56 NC_004812.1 + 6559 0.7 0.710995
Target:  5'- ---cGCGAGUCGCuuaggcaagaaCGGCGGGCGUCuGCg -3'
miRNA:   3'- aaacUGCUCGGCG-----------GCUGCCUGUAG-CG- -5'
21439 5' -56 NC_004812.1 + 48346 0.71 0.670762
Target:  5'- --cGGCGGacGCCGCCGagggcuccgccGCGGACGcCGCc -3'
miRNA:   3'- aaaCUGCU--CGGCGGC-----------UGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 128027 0.71 0.660604
Target:  5'- --cGGCGcGGCCGUCGagcGCGGGCAgcacggCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGGC---UGCCUGUa-----GCG- -5'
21439 5' -56 NC_004812.1 + 116499 0.71 0.660604
Target:  5'- --gGGCcggGGGUCGCgGACGGACG-CGCg -3'
miRNA:   3'- aaaCUG---CUCGGCGgCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 66664 0.72 0.599463
Target:  5'- --aGGCGcGCCGCCGcucGCGGGCcccGUCGUc -3'
miRNA:   3'- aaaCUGCuCGGCGGC---UGCCUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 45727 0.72 0.609637
Target:  5'- --gGACGGccuGCCGCCgGGCGGGCucCGCg -3'
miRNA:   3'- aaaCUGCU---CGGCGG-CUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 138426 0.72 0.609637
Target:  5'- --cGGgGGGCUGCCGGCGcccCAUCGCc -3'
miRNA:   3'- aaaCUgCUCGGCGGCUGCcu-GUAGCG- -5'
21439 5' -56 NC_004812.1 + 153781 0.72 0.609637
Target:  5'- --cGAgGAgugGCCgGCCGACGGGCccgccGUCGCg -3'
miRNA:   3'- aaaCUgCU---CGG-CGGCUGCCUG-----UAGCG- -5'
21439 5' -56 NC_004812.1 + 579 0.72 0.619827
Target:  5'- --cGugGAGCCGCgGGCGcGGCuccgguagCGCg -3'
miRNA:   3'- aaaCugCUCGGCGgCUGC-CUGua------GCG- -5'
21439 5' -56 NC_004812.1 + 73144 0.72 0.619827
Target:  5'- --cGGCGcGCCGCCG-CGGACcagcaCGCg -3'
miRNA:   3'- aaaCUGCuCGGCGGCuGCCUGua---GCG- -5'
21439 5' -56 NC_004812.1 + 60918 0.72 0.630027
Target:  5'- --cGACGGGCUGaaGugGGACggCGUg -3'
miRNA:   3'- aaaCUGCUCGGCggCugCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 150707 0.7 0.710995
Target:  5'- --cGGCGGcuccGcCCGCCGGCGGACGggGUa -3'
miRNA:   3'- aaaCUGCU----C-GGCGGCUGCCUGUagCG- -5'
21439 5' -56 NC_004812.1 + 117349 0.72 0.630027
Target:  5'- --cGGCG-GCCGCCGACGcgguggggcGGCcgCGCc -3'
miRNA:   3'- aaaCUGCuCGGCGGCUGC---------CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 123606 0.72 0.630027
Target:  5'- --gGGCGGGCgGgCGGCGGAgGUcCGCu -3'
miRNA:   3'- aaaCUGCUCGgCgGCUGCCUgUA-GCG- -5'
21439 5' -56 NC_004812.1 + 93744 0.71 0.650424
Target:  5'- --aGACgGGGCCGCCG-CGGA-GUCGUu -3'
miRNA:   3'- aaaCUG-CUCGGCGGCuGCCUgUAGCG- -5'
21439 5' -56 NC_004812.1 + 82090 0.71 0.650424
Target:  5'- --gGGCGcguGGCCcggcugGCCGGCGGACAgcagCGCc -3'
miRNA:   3'- aaaCUGC---UCGG------CGGCUGCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 72842 0.71 0.650424
Target:  5'- ---cGCGAGCgGCCGccggcgaucagcGCGGACAgCGCg -3'
miRNA:   3'- aaacUGCUCGgCGGC------------UGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 66778 0.71 0.660604
Target:  5'- -gUGGCGAG-CGCCGugGGuCGggGCa -3'
miRNA:   3'- aaACUGCUCgGCGGCugCCuGUagCG- -5'
21439 5' -56 NC_004812.1 + 113454 0.71 0.660604
Target:  5'- ----cCGGGCCGCCG-CGG-UGUCGCg -3'
miRNA:   3'- aaacuGCUCGGCGGCuGCCuGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.