Results 161 - 180 of 515 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21439 | 5' | -56 | NC_004812.1 | + | 68178 | 0.71 | 0.680889 |
Target: 5'- --cGGCG-GCCGCgGGCGGGgG-CGCg -3' miRNA: 3'- aaaCUGCuCGGCGgCUGCCUgUaGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 54433 | 0.71 | 0.670762 |
Target: 5'- -gUGGCGccGGUCGgCGGCGGGCAgacguagaaggUCGCg -3' miRNA: 3'- aaACUGC--UCGGCgGCUGCCUGU-----------AGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 48346 | 0.71 | 0.670762 |
Target: 5'- --cGGCGGacGCCGCCGagggcuccgccGCGGACGcCGCc -3' miRNA: 3'- aaaCUGCU--CGGCGGC-----------UGCCUGUaGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 128027 | 0.71 | 0.660604 |
Target: 5'- --cGGCGcGGCCGUCGagcGCGGGCAgcacggCGCg -3' miRNA: 3'- aaaCUGC-UCGGCGGC---UGCCUGUa-----GCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 116499 | 0.71 | 0.660604 |
Target: 5'- --gGGCcggGGGUCGCgGACGGACG-CGCg -3' miRNA: 3'- aaaCUG---CUCGGCGgCUGCCUGUaGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 113454 | 0.71 | 0.660604 |
Target: 5'- ----cCGGGCCGCCG-CGG-UGUCGCg -3' miRNA: 3'- aaacuGCUCGGCGGCuGCCuGUAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 66778 | 0.71 | 0.660604 |
Target: 5'- -gUGGCGAG-CGCCGugGGuCGggGCa -3' miRNA: 3'- aaACUGCUCgGCGGCugCCuGUagCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 72842 | 0.71 | 0.650424 |
Target: 5'- ---cGCGAGCgGCCGccggcgaucagcGCGGACAgCGCg -3' miRNA: 3'- aaacUGCUCGgCGGC------------UGCCUGUaGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 82090 | 0.71 | 0.650424 |
Target: 5'- --gGGCGcguGGCCcggcugGCCGGCGGACAgcagCGCc -3' miRNA: 3'- aaaCUGC---UCGG------CGGCUGCCUGUa---GCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 23025 | 0.71 | 0.680889 |
Target: 5'- --cGGCGcgcuaccGCCGCCGGCaGGACGcCGCc -3' miRNA: 3'- aaaCUGCu------CGGCGGCUG-CCUGUaGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 93744 | 0.71 | 0.650424 |
Target: 5'- --aGACgGGGCCGCCG-CGGA-GUCGUu -3' miRNA: 3'- aaaCUG-CUCGGCGGCuGCCUgUAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 46292 | 0.7 | 0.710995 |
Target: 5'- --gGGCGgccggaGGCCG-CGGCGGGCcgCGCg -3' miRNA: 3'- aaaCUGC------UCGGCgGCUGCCUGuaGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 129430 | 0.7 | 0.701014 |
Target: 5'- --cGGCgGGGCCGCgCGGCGGcgGCAcggCGCg -3' miRNA: 3'- aaaCUG-CUCGGCG-GCUGCC--UGUa--GCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 104996 | 0.7 | 0.701014 |
Target: 5'- ---cGCGGGCCGCCG-CGG-CGccccUCGCg -3' miRNA: 3'- aaacUGCUCGGCGGCuGCCuGU----AGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 92765 | 0.7 | 0.701014 |
Target: 5'- ---cGCGGGCCGCCcGCGGcguucAUGUCGCu -3' miRNA: 3'- aaacUGCUCGGCGGcUGCC-----UGUAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 156032 | 0.7 | 0.701014 |
Target: 5'- --gGGCcggGGGCCGCgCcgcgggacgGGCGGGCGUCGCg -3' miRNA: 3'- aaaCUG---CUCGGCG-G---------CUGCCUGUAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 51656 | 0.71 | 0.690976 |
Target: 5'- gUUGACGucGGCCggGCCG-CGGACcuguuuguGUCGCa -3' miRNA: 3'- aAACUGC--UCGG--CGGCuGCCUG--------UAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 112752 | 0.71 | 0.690976 |
Target: 5'- --cGGCGGcGCCGCCGcgccCGGACucggCGCc -3' miRNA: 3'- aaaCUGCU-CGGCGGCu---GCCUGua--GCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 39094 | 0.71 | 0.690976 |
Target: 5'- --cGGCacGGCCaCCGACGGccGCGUCGCg -3' miRNA: 3'- aaaCUGc-UCGGcGGCUGCC--UGUAGCG- -5' |
|||||||
21439 | 5' | -56 | NC_004812.1 | + | 60810 | 0.71 | 0.689969 |
Target: 5'- --gGGCGuaGGCCgagaacccgaacuGCCGGCGGGCGcgcUCGCa -3' miRNA: 3'- aaaCUGC--UCGG-------------CGGCUGCCUGU---AGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home