miRNA display CGI


Results 41 - 60 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 46913 0.72 0.609637
Target:  5'- --cGGCGGccGCCGCCGcgGCGGACAcaucCGCc -3'
miRNA:   3'- aaaCUGCU--CGGCGGC--UGCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 148533 0.73 0.539157
Target:  5'- ---cGCGGGCCGCCgGGCGcGGCgggGUCGCg -3'
miRNA:   3'- aaacUGCUCGGCGG-CUGC-CUG---UAGCG- -5'
21439 5' -56 NC_004812.1 + 30946 0.78 0.292928
Target:  5'- --cGGCGGGCCGCgGGCGcGGCggCGCg -3'
miRNA:   3'- aaaCUGCUCGGCGgCUGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 43870 0.72 0.609637
Target:  5'- --cGGCGGcGCCGCCGcGCGGu--UCGCg -3'
miRNA:   3'- aaaCUGCU-CGGCGGC-UGCCuguAGCG- -5'
21439 5' -56 NC_004812.1 + 100961 0.79 0.260472
Target:  5'- --gGGCGcGCCGCCG-CGGACGUcCGCg -3'
miRNA:   3'- aaaCUGCuCGGCGGCuGCCUGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 48957 0.7 0.701014
Target:  5'- --cGGCGAGCC-UCGACGGGgcCGUCGa -3'
miRNA:   3'- aaaCUGCUCGGcGGCUGCCU--GUAGCg -5'
21439 5' -56 NC_004812.1 + 73905 0.78 0.306768
Target:  5'- --gGGCGAGCCGCCGuCGGcCggCGCc -3'
miRNA:   3'- aaaCUGCUCGGCGGCuGCCuGuaGCG- -5'
21439 5' -56 NC_004812.1 + 30524 0.7 0.701014
Target:  5'- --gGGCcggGGGCCGCgCcgcgggacgGGCGGGCGUCGCg -3'
miRNA:   3'- aaaCUG---CUCGGCG-G---------CUGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 137742 0.71 0.660604
Target:  5'- ---cGCGGGCCGCCGACccccgGGACc-CGCu -3'
miRNA:   3'- aaacUGCUCGGCGGCUG-----CCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 59250 0.71 0.640228
Target:  5'- --cGGCGAGCUGCuUGGCGG-CGgugCGCg -3'
miRNA:   3'- aaaCUGCUCGGCG-GCUGCCuGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 153629 0.72 0.619827
Target:  5'- -gUGACGGGCCgGCCcaugcgGGCGGGCGgggagagggCGCg -3'
miRNA:   3'- aaACUGCUCGG-CGG------CUGCCUGUa--------GCG- -5'
21439 5' -56 NC_004812.1 + 25157 0.72 0.616769
Target:  5'- --gGGCgGAGCCGCCGGucgcccccgcgcucCGGggcgGCGUCGCg -3'
miRNA:   3'- aaaCUG-CUCGGCGGCU--------------GCC----UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 79228 0.72 0.609637
Target:  5'- --cGACcuGGCCGCCuGGCuGGCGUCGCu -3'
miRNA:   3'- aaaCUGc-UCGGCGG-CUGcCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 119051 0.72 0.589313
Target:  5'- -gUGGCGGGCUGCCacaucggcacGGCGGACuuucacCGCa -3'
miRNA:   3'- aaACUGCUCGGCGG----------CUGCCUGua----GCG- -5'
21439 5' -56 NC_004812.1 + 59892 0.73 0.569112
Target:  5'- --cGGCGAGCCcuaucGCCGccGCGGACccCGCg -3'
miRNA:   3'- aaaCUGCUCGG-----CGGC--UGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 81086 0.73 0.559075
Target:  5'- --cGACGcGCUGCgGGCGGACGU-GCa -3'
miRNA:   3'- aaaCUGCuCGGCGgCUGCCUGUAgCG- -5'
21439 5' -56 NC_004812.1 + 3608 0.73 0.553076
Target:  5'- --cGGCGAggagcucuugcgcuuGCgCGCCGGCGGGCG-CGCg -3'
miRNA:   3'- aaaCUGCU---------------CG-GCGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 68864 0.74 0.490534
Target:  5'- -cUGGCGuuCCcCCGGCGGGCGUCGUu -3'
miRNA:   3'- aaACUGCucGGcGGCUGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 30627 0.75 0.444048
Target:  5'- -gUGACGGGCCGC--GCGGACGcggggCGCg -3'
miRNA:   3'- aaACUGCUCGGCGgcUGCCUGUa----GCG- -5'
21439 5' -56 NC_004812.1 + 104288 0.76 0.375162
Target:  5'- --cGACGGGCCgucGCCGGCGGGCGaCGg -3'
miRNA:   3'- aaaCUGCUCGG---CGGCUGCCUGUaGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.