miRNA display CGI


Results 101 - 120 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 140794 0.69 0.759717
Target:  5'- -aUGAUGAGCCGCaCGAgGcGCGagGCg -3'
miRNA:   3'- aaACUGCUCGGCG-GCUgCcUGUagCG- -5'
21439 5' -56 NC_004812.1 + 116602 0.69 0.769161
Target:  5'- ---cGCGGGCCGCCG-CGucUGUCGCg -3'
miRNA:   3'- aaacUGCUCGGCGGCuGCcuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 16860 0.69 0.787677
Target:  5'- --gGGCGGGCCccgggaCCGGCGuGGCccGUCGCg -3'
miRNA:   3'- aaaCUGCUCGGc-----GGCUGC-CUG--UAGCG- -5'
21439 5' -56 NC_004812.1 + 124240 0.69 0.787677
Target:  5'- --cGGCGGGCCuGgCGGgGGGCG-CGCg -3'
miRNA:   3'- aaaCUGCUCGG-CgGCUgCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 62071 0.69 0.796731
Target:  5'- -----aGGGCCGCCGACaGGGCggCGg -3'
miRNA:   3'- aaacugCUCGGCGGCUG-CCUGuaGCg -5'
21439 5' -56 NC_004812.1 + 131002 0.7 0.701014
Target:  5'- --cGugGGGCgCGCCGACgacgagaaGGACGagGCg -3'
miRNA:   3'- aaaCugCUCG-GCGGCUG--------CCUGUagCG- -5'
21439 5' -56 NC_004812.1 + 80888 0.7 0.701014
Target:  5'- --gGACacgGAGCCGCUGGCGcGGCugcugCGCa -3'
miRNA:   3'- aaaCUG---CUCGGCGGCUGC-CUGua---GCG- -5'
21439 5' -56 NC_004812.1 + 105212 0.78 0.313874
Target:  5'- --gGGCGAGCgCGCCGGCGGcCggCGCc -3'
miRNA:   3'- aaaCUGCUCG-GCGGCUGCCuGuaGCG- -5'
21439 5' -56 NC_004812.1 + 140093 0.76 0.391697
Target:  5'- -gUGAUGAGCgCGCCcauGGCGGGCG-CGCg -3'
miRNA:   3'- aaACUGCUCG-GCGG---CUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 25780 0.74 0.48105
Target:  5'- --gGGCGGcGCC-CCGGCGGACGaCGCg -3'
miRNA:   3'- aaaCUGCU-CGGcGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 3441 0.74 0.503956
Target:  5'- --cGGCGccAGCCGCCGcgggggucgggcccgGCGGGCgGUCGCg -3'
miRNA:   3'- aaaCUGC--UCGGCGGC---------------UGCCUG-UAGCG- -5'
21439 5' -56 NC_004812.1 + 23397 0.73 0.559075
Target:  5'- --gGGCGAGCgucCGgCGACGGGCGUCcgGCg -3'
miRNA:   3'- aaaCUGCUCG---GCgGCUGCCUGUAG--CG- -5'
21439 5' -56 NC_004812.1 + 107087 0.73 0.559075
Target:  5'- --cGAUGAcCuCGCCGACGGGgGUCGUg -3'
miRNA:   3'- aaaCUGCUcG-GCGGCUGCCUgUAGCG- -5'
21439 5' -56 NC_004812.1 + 65611 0.73 0.579194
Target:  5'- --cGGCGAcugcGCCGacgaCGACGaGGCGUCGCu -3'
miRNA:   3'- aaaCUGCU----CGGCg---GCUGC-CUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 134699 0.72 0.599463
Target:  5'- --cGcCGAGCCGCCGGCugcgcgaaccgGGACGUCu- -3'
miRNA:   3'- aaaCuGCUCGGCGGCUG-----------CCUGUAGcg -5'
21439 5' -56 NC_004812.1 + 43829 0.72 0.609637
Target:  5'- --gGGgGAGCCGCCG-CGcGGC-UCGCg -3'
miRNA:   3'- aaaCUgCUCGGCGGCuGC-CUGuAGCG- -5'
21439 5' -56 NC_004812.1 + 11986 0.72 0.619827
Target:  5'- --gGGCGGGguuCCGCCGGCGGGCuccggucucCGCg -3'
miRNA:   3'- aaaCUGCUC---GGCGGCUGCCUGua-------GCG- -5'
21439 5' -56 NC_004812.1 + 148250 0.72 0.630027
Target:  5'- --cGGCG-GCCGCCGACgcggugGGGCGgccgCGCc -3'
miRNA:   3'- aaaCUGCuCGGCGGCUG------CCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 117186 0.71 0.650424
Target:  5'- --cGGCGAGgCGCuCGACGGgacccGCGUCGg -3'
miRNA:   3'- aaaCUGCUCgGCG-GCUGCC-----UGUAGCg -5'
21439 5' -56 NC_004812.1 + 80496 0.71 0.669748
Target:  5'- --cGACGAgcucgagGCCGCCGccGCGGACcUgGCg -3'
miRNA:   3'- aaaCUGCU-------CGGCGGC--UGCCUGuAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.