miRNA display CGI


Results 121 - 140 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 54498 0.73 0.559075
Target:  5'- --cGGCgGGGCCGgCGgcACGGGCAUCGUc -3'
miRNA:   3'- aaaCUG-CUCGGCgGC--UGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 1994 0.73 0.569112
Target:  5'- -gUGGCGGGucCCGCCGGCGG---UCGCu -3'
miRNA:   3'- aaACUGCUC--GGCGGCUGCCuguAGCG- -5'
21439 5' -56 NC_004812.1 + 135228 0.69 0.787677
Target:  5'- --aGACG-GCCGCgGcGCGGAgcUCGCg -3'
miRNA:   3'- aaaCUGCuCGGCGgC-UGCCUguAGCG- -5'
21439 5' -56 NC_004812.1 + 3103 0.69 0.777558
Target:  5'- --gGGCGGgggaggcGCCGCCGAgcuccucgcCGGGCAgcggCGCg -3'
miRNA:   3'- aaaCUGCU-------CGGCGGCU---------GCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 131399 0.69 0.769161
Target:  5'- -gUGAgCGAGCaCGCguccugGGCGGACGUgCGCg -3'
miRNA:   3'- aaACU-GCUCG-GCGg-----CUGCCUGUA-GCG- -5'
21439 5' -56 NC_004812.1 + 28273 0.72 0.609637
Target:  5'- --cGAgGAgugGCCgGCCGACGGGCccgccGUCGCg -3'
miRNA:   3'- aaaCUgCU---CGG-CGGCUGCCUG-----UAGCG- -5'
21439 5' -56 NC_004812.1 + 79459 0.72 0.619827
Target:  5'- --gGGCGGGCUGCCGGcCGaGACGcggCGCc -3'
miRNA:   3'- aaaCUGCUCGGCGGCU-GC-CUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 154507 0.72 0.630027
Target:  5'- --gGGCGGGCgGgCGGCGGAgGUcCGCu -3'
miRNA:   3'- aaaCUGCUCGgCgGCUGCCUgUA-GCG- -5'
21439 5' -56 NC_004812.1 + 137742 0.71 0.660604
Target:  5'- ---cGCGGGCCGCCGACccccgGGACc-CGCu -3'
miRNA:   3'- aaacUGCUCGGCGGCUG-----CCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 30524 0.7 0.701014
Target:  5'- --gGGCcggGGGCCGCgCcgcgggacgGGCGGGCGUCGCg -3'
miRNA:   3'- aaaCUG---CUCGGCG-G---------CUGCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 111694 0.7 0.701014
Target:  5'- --cGACGuGGCCGCUGgcgaucugggccACGGGCGagcUCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGGC------------UGCCUGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 43319 0.7 0.710995
Target:  5'- ---uGCGuGCCGCCGAagggcUGGuGCAUCGCc -3'
miRNA:   3'- aaacUGCuCGGCGGCU-----GCC-UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 31629 0.7 0.720909
Target:  5'- --cGGCGcGGUCGCCGGCGGGgGUgggggcggCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCGGCUGCCUgUA--------GCG- -5'
21439 5' -56 NC_004812.1 + 95979 0.7 0.720909
Target:  5'- --cGACGAGgugaCCGUCGGCGGGgA-CGCg -3'
miRNA:   3'- aaaCUGCUC----GGCGGCUGCCUgUaGCG- -5'
21439 5' -56 NC_004812.1 + 137946 0.7 0.720909
Target:  5'- --cGGCGGG-CGCCG-UGGACAUgGCc -3'
miRNA:   3'- aaaCUGCUCgGCGGCuGCCUGUAgCG- -5'
21439 5' -56 NC_004812.1 + 88207 0.7 0.740501
Target:  5'- --gGGCGAGCCGCgGcccCGGACggCGg -3'
miRNA:   3'- aaaCUGCUCGGCGgCu--GCCUGuaGCg -5'
21439 5' -56 NC_004812.1 + 28927 0.7 0.750161
Target:  5'- --cGACGAcGCCGCCGcCuGGAgGUgGCc -3'
miRNA:   3'- aaaCUGCU-CGGCGGCuG-CCUgUAgCG- -5'
21439 5' -56 NC_004812.1 + 87053 0.7 0.750161
Target:  5'- --cGGCGcGGCCGgCGccGCGGGCAggggCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCgGC--UGCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 50083 0.69 0.759717
Target:  5'- -gUGACGAaggcgccgcgGCCGCCGGCGccccGCGcCGCg -3'
miRNA:   3'- aaACUGCU----------CGGCGGCUGCc---UGUaGCG- -5'
21439 5' -56 NC_004812.1 + 96536 0.69 0.759717
Target:  5'- ---cGCGGGCCGCCGGCcuGGuCggCGCc -3'
miRNA:   3'- aaacUGCUCGGCGGCUG--CCuGuaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.