miRNA display CGI


Results 141 - 160 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 41117 0.68 0.839617
Target:  5'- -gUGAggcCGGGCCGCCGcccggcGCGGccGCAcgCGCg -3'
miRNA:   3'- aaACU---GCUCGGCGGC------UGCC--UGUa-GCG- -5'
21439 5' -56 NC_004812.1 + 4777 0.68 0.839617
Target:  5'- --cGGCucGCCGCUGGCGuaccCGUCGCg -3'
miRNA:   3'- aaaCUGcuCGGCGGCUGCcu--GUAGCG- -5'
21439 5' -56 NC_004812.1 + 72833 0.69 0.787677
Target:  5'- --cGACGGGCCGCUGcagucgcugUGGGCG-CGCu -3'
miRNA:   3'- aaaCUGCUCGGCGGCu--------GCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 16860 0.69 0.787677
Target:  5'- --gGGCGGGCCccgggaCCGGCGuGGCccGUCGCg -3'
miRNA:   3'- aaaCUGCUCGGc-----GGCUGC-CUG--UAGCG- -5'
21439 5' -56 NC_004812.1 + 82321 0.69 0.769161
Target:  5'- --gGGCGAGCgccaugaGCCGgacccGCGGACGgugCGCg -3'
miRNA:   3'- aaaCUGCUCGg------CGGC-----UGCCUGUa--GCG- -5'
21439 5' -56 NC_004812.1 + 96536 0.69 0.759717
Target:  5'- ---cGCGGGCCGCCGGCcuGGuCggCGCc -3'
miRNA:   3'- aaacUGCUCGGCGGCUG--CCuGuaGCG- -5'
21439 5' -56 NC_004812.1 + 3712 0.69 0.759717
Target:  5'- --cGGCGGcGgCGCCGGCGGAg--CGCa -3'
miRNA:   3'- aaaCUGCU-CgGCGGCUGCCUguaGCG- -5'
21439 5' -56 NC_004812.1 + 87053 0.7 0.750161
Target:  5'- --cGGCGcGGCCGgCGccGCGGGCAggggCGCg -3'
miRNA:   3'- aaaCUGC-UCGGCgGC--UGCCUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 17481 0.7 0.750161
Target:  5'- --cGGCGGauGCCGCgGuggcgcuccCGGACGUCGCc -3'
miRNA:   3'- aaaCUGCU--CGGCGgCu--------GCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 52103 0.7 0.740501
Target:  5'- --cGACGAccGCCcgucccgcggGCCGAUcGGCAUCGCg -3'
miRNA:   3'- aaaCUGCU--CGG----------CGGCUGcCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 62071 0.69 0.796731
Target:  5'- -----aGGGCCGCCGACaGGGCggCGg -3'
miRNA:   3'- aaacugCUCGGCGGCUG-CCUGuaGCg -5'
21439 5' -56 NC_004812.1 + 110283 0.69 0.796731
Target:  5'- -gUGGCGGGCgGaCUGGCGGcgGCuGUCGCc -3'
miRNA:   3'- aaACUGCUCGgC-GGCUGCC--UG-UAGCG- -5'
21439 5' -56 NC_004812.1 + 119854 0.68 0.831384
Target:  5'- -gUGGCGcuguaccaccAGCUGCgGACGGGCcugcaccccgggGUCGCc -3'
miRNA:   3'- aaACUGC----------UCGGCGgCUGCCUG------------UAGCG- -5'
21439 5' -56 NC_004812.1 + 15967 0.68 0.831384
Target:  5'- --cGugGcGCCGCCG-CGcGGCggCGCg -3'
miRNA:   3'- aaaCugCuCGGCGGCuGC-CUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 153194 0.68 0.830551
Target:  5'- --cGGCGccggagGGCCGCCGgggggagGCGGGCggcgaGUCGCc -3'
miRNA:   3'- aaaCUGC------UCGGCGGC-------UGCCUG-----UAGCG- -5'
21439 5' -56 NC_004812.1 + 150192 0.68 0.822971
Target:  5'- --gGGCGGGCUGUaCGGCGcgccguaccccGGCGUCGCc -3'
miRNA:   3'- aaaCUGCUCGGCG-GCUGC-----------CUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 72938 0.68 0.814386
Target:  5'- -cUGGCGgccaAGCUGCgCG-CGGcCAUCGCg -3'
miRNA:   3'- aaACUGC----UCGGCG-GCuGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 136679 0.68 0.814386
Target:  5'- --cGGCGgaaauaucGGCCGCCGGCGcgguGGCGgcggCGCg -3'
miRNA:   3'- aaaCUGC--------UCGGCGGCUGC----CUGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 60677 0.68 0.805636
Target:  5'- -aUGACGAGCCGCUGcguCGGGaagGUCc- -3'
miRNA:   3'- aaACUGCUCGGCGGCu--GCCUg--UAGcg -5'
21439 5' -56 NC_004812.1 + 145304 0.68 0.805636
Target:  5'- -gUGGCGGGCCcgguggGCCGAUG-ACguuGUCGCg -3'
miRNA:   3'- aaACUGCUCGG------CGGCUGCcUG---UAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.