miRNA display CGI


Results 21 - 40 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21439 5' -56 NC_004812.1 + 3493 0.66 0.92214
Target:  5'- --cGGCGGGCCGCgGgcGCGGGCccGggGCc -3'
miRNA:   3'- aaaCUGCUCGGCGgC--UGCCUG--UagCG- -5'
21439 5' -56 NC_004812.1 + 16833 0.66 0.921588
Target:  5'- --aGACGgcGGCCGCCGcccuuagGCGcGCgGUCGCg -3'
miRNA:   3'- aaaCUGC--UCGGCGGC-------UGCcUG-UAGCG- -5'
21439 5' -56 NC_004812.1 + 133739 0.66 0.921588
Target:  5'- gUUGGCgGGGCCauaagagGCCG-CGGACG-CGUa -3'
miRNA:   3'- aAACUG-CUCGG-------CGGCuGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 35917 0.66 0.921588
Target:  5'- --cGACGAGCuCGCgcucccgGGCGGccgcuugaacugcACGUCGCu -3'
miRNA:   3'- aaaCUGCUCG-GCGg------CUGCC-------------UGUAGCG- -5'
21439 5' -56 NC_004812.1 + 63483 0.66 0.921588
Target:  5'- --cGACGAacgucacgcagacGCCGCCGcCcGACAcCGCg -3'
miRNA:   3'- aaaCUGCU-------------CGGCGGCuGcCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 110212 0.66 0.916509
Target:  5'- -cUGcACGAGaCGCCGACGG-CAaCGg -3'
miRNA:   3'- aaAC-UGCUCgGCGGCUGCCuGUaGCg -5'
21439 5' -56 NC_004812.1 + 26722 0.66 0.916509
Target:  5'- --aGGCGcGUCGCaCGGCGGGCcgUGg -3'
miRNA:   3'- aaaCUGCuCGGCG-GCUGCCUGuaGCg -5'
21439 5' -56 NC_004812.1 + 113950 0.66 0.916509
Target:  5'- -gUGACGuG-CGCCuggGAUGG-CGUCGCg -3'
miRNA:   3'- aaACUGCuCgGCGG---CUGCCuGUAGCG- -5'
21439 5' -56 NC_004812.1 + 28576 0.66 0.916509
Target:  5'- --cGGCcGGCaGCUGGCGGACGaCGUg -3'
miRNA:   3'- aaaCUGcUCGgCGGCUGCCUGUaGCG- -5'
21439 5' -56 NC_004812.1 + 60310 0.66 0.916509
Target:  5'- cUUGGgGgccuugcccuGGCCGCCGuCGaGCAUCGUg -3'
miRNA:   3'- aAACUgC----------UCGGCGGCuGCcUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 35813 0.66 0.916509
Target:  5'- -----gGGGCCGUgGGgcUGGGCGUCGCc -3'
miRNA:   3'- aaacugCUCGGCGgCU--GCCUGUAGCG- -5'
21439 5' -56 NC_004812.1 + 21053 0.66 0.916509
Target:  5'- --cGACGAucuCCGCCgGGCuGACGUCGg -3'
miRNA:   3'- aaaCUGCUc--GGCGG-CUGcCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 71387 0.66 0.916509
Target:  5'- --gGACGGGCga--GGCGGGgGUCGCa -3'
miRNA:   3'- aaaCUGCUCGgcggCUGCCUgUAGCG- -5'
21439 5' -56 NC_004812.1 + 18488 0.66 0.916509
Target:  5'- --gGACGAGggGCgGAgGGGCGUCGa -3'
miRNA:   3'- aaaCUGCUCggCGgCUgCCUGUAGCg -5'
21439 5' -56 NC_004812.1 + 116464 0.66 0.916509
Target:  5'- -cUGugG-GUCGCggCGGCGGAUAgcuUCGCc -3'
miRNA:   3'- aaACugCuCGGCG--GCUGCCUGU---AGCG- -5'
21439 5' -56 NC_004812.1 + 96492 0.66 0.916509
Target:  5'- --gGACGccGCCGCCagcGGCGGACccUGCc -3'
miRNA:   3'- aaaCUGCu-CGGCGG---CUGCCUGuaGCG- -5'
21439 5' -56 NC_004812.1 + 62182 0.66 0.916509
Target:  5'- --cGGgGGGCCGCgaacagggGGCGGACGUCu- -3'
miRNA:   3'- aaaCUgCUCGGCGg-------CUGCCUGUAGcg -5'
21439 5' -56 NC_004812.1 + 14409 0.66 0.916509
Target:  5'- --cGACGA--CGCCGGCGGcCAgcccCGCg -3'
miRNA:   3'- aaaCUGCUcgGCGGCUGCCuGUa---GCG- -5'
21439 5' -56 NC_004812.1 + 79255 0.66 0.916509
Target:  5'- --gGGCGAcGCCGCgGGCcagGGGCucGUCGUc -3'
miRNA:   3'- aaaCUGCU-CGGCGgCUG---CCUG--UAGCG- -5'
21439 5' -56 NC_004812.1 + 29107 0.66 0.916509
Target:  5'- ---aGCGA-CCGCCGGCGGGaccCGCc -3'
miRNA:   3'- aaacUGCUcGGCGGCUGCCUguaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.