miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21444 3' -53.6 NC_004812.1 + 94871 1.11 0.004411
Target:  5'- cCGUCGUCACGUGAUCAUCGGGGUCACg -3'
miRNA:   3'- -GCAGCAGUGCACUAGUAGCCCCAGUG- -5'
21444 3' -53.6 NC_004812.1 + 7224 1 0.022629
Target:  5'- cCGUCGUCACGUGAUCAUaGGGGUCACg -3'
miRNA:   3'- -GCAGCAGUGCACUAGUAgCCCCAGUG- -5'
21444 3' -53.6 NC_004812.1 + 132734 0.92 0.073068
Target:  5'- -cUCGUCACGUGAUCAUaGGGGUCACg -3'
miRNA:   3'- gcAGCAGUGCACUAGUAgCCCCAGUG- -5'
21444 3' -53.6 NC_004812.1 + 134578 0.77 0.486822
Target:  5'- --aCGUcCACGUGGUCGUCGGGGagUACg -3'
miRNA:   3'- gcaGCA-GUGCACUAGUAGCCCCa-GUG- -5'
21444 3' -53.6 NC_004812.1 + 132644 0.73 0.698152
Target:  5'- gCGUaCGUCACG---UCcUCGGGGUCGCu -3'
miRNA:   3'- -GCA-GCAGUGCacuAGuAGCCCCAGUG- -5'
21444 3' -53.6 NC_004812.1 + 5116 0.72 0.757283
Target:  5'- cCGUCGUCGuCG---UCAUCGGGGcCGCc -3'
miRNA:   3'- -GCAGCAGU-GCacuAGUAGCCCCaGUG- -5'
21444 3' -53.6 NC_004812.1 + 130625 0.72 0.757283
Target:  5'- cCGUCGUCGuCG---UCAUCGGGGcCGCc -3'
miRNA:   3'- -GCAGCAGU-GCacuAGUAGCCCCaGUG- -5'
21444 3' -53.6 NC_004812.1 + 38782 0.72 0.766804
Target:  5'- gCG-CGUCGCGUcgcGAUC-UCGaGGGUCGCc -3'
miRNA:   3'- -GCaGCAGUGCA---CUAGuAGC-CCCAGUG- -5'
21444 3' -53.6 NC_004812.1 + 7881 0.72 0.766804
Target:  5'- gCG-CGUCGCGUcgcGAUC-UCGaGGGUCGCc -3'
miRNA:   3'- -GCaGCAGUGCA---CUAGuAGC-CCCAGUG- -5'
21444 3' -53.6 NC_004812.1 + 5545 0.72 0.794608
Target:  5'- uCGUCGUCGuCGUcGUCGggcuccUCGGGGUCcgGCg -3'
miRNA:   3'- -GCAGCAGU-GCAcUAGU------AGCCCCAG--UG- -5'
21444 3' -53.6 NC_004812.1 + 131053 0.72 0.794608
Target:  5'- uCGUCGUCGuCGUcGUCGggcuccUCGGGGUCcgGCg -3'
miRNA:   3'- -GCAGCAGU-GCAcUAGU------AGCCCCAG--UG- -5'
21444 3' -53.6 NC_004812.1 + 78088 0.7 0.846021
Target:  5'- aGUCGUC-CGUGGUgcggaugaCGUCGcGGGcCACg -3'
miRNA:   3'- gCAGCAGuGCACUA--------GUAGC-CCCaGUG- -5'
21444 3' -53.6 NC_004812.1 + 35832 0.7 0.861681
Target:  5'- uCGcCGUCGCGguacuUGcgCAgcagcgCGGGGUCGCu -3'
miRNA:   3'- -GCaGCAGUGC-----ACuaGUa-----GCCCCAGUG- -5'
21444 3' -53.6 NC_004812.1 + 47569 0.69 0.883597
Target:  5'- aGUCGguggcgaagCGCG-GAgggCGcUCGGGGUCGCg -3'
miRNA:   3'- gCAGCa--------GUGCaCUa--GU-AGCCCCAGUG- -5'
21444 3' -53.6 NC_004812.1 + 99393 0.69 0.914441
Target:  5'- uGUCGgcgcugcggcggCugG-GGUCGUCGGGG-CGCa -3'
miRNA:   3'- gCAGCa-----------GugCaCUAGUAGCCCCaGUG- -5'
21444 3' -53.6 NC_004812.1 + 73742 0.68 0.92676
Target:  5'- aCGUCGuUCAUGUugaaGGUCAcgCGGGGgCGCc -3'
miRNA:   3'- -GCAGC-AGUGCA----CUAGUa-GCCCCaGUG- -5'
21444 3' -53.6 NC_004812.1 + 95673 0.68 0.927292
Target:  5'- uGUCGgcgcuguacggcagcCGCGUGGUCAUUGGGuGcCGCc -3'
miRNA:   3'- gCAGCa--------------GUGCACUAGUAGCCC-CaGUG- -5'
21444 3' -53.6 NC_004812.1 + 91421 0.68 0.936952
Target:  5'- aGUCGcgCACGUcccgGUCGGGGUCGg -3'
miRNA:   3'- gCAGCa-GUGCAcuagUAGCCCCAGUg -5'
21444 3' -53.6 NC_004812.1 + 32596 0.68 0.936952
Target:  5'- cCGUCGUgUACG-GGUCGUaggcgccgCGGGcGUCGCa -3'
miRNA:   3'- -GCAGCA-GUGCaCUAGUA--------GCCC-CAGUG- -5'
21444 3' -53.6 NC_004812.1 + 97152 0.68 0.936952
Target:  5'- ---gGUCGCGUGGuugaUCGcCGGGGUCGu -3'
miRNA:   3'- gcagCAGUGCACU----AGUaGCCCCAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.