Results 21 - 40 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21444 | 5' | -59.9 | NC_004812.1 | + | 39497 | 0.66 | 0.783247 |
Target: 5'- uGGCGcgCCgCCCGgaggccgCGCCUcccGGUAAUGGa -3' miRNA: 3'- gCCGCa-GG-GGGCa------GCGGA---UCGUUGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 123585 | 0.66 | 0.774297 |
Target: 5'- gGGCucgaGUCgUCCGUCGUCgggcgggcgGGCGGCGGa -3' miRNA: 3'- gCCG----CAGgGGGCAGCGGa--------UCGUUGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 32840 | 0.66 | 0.774297 |
Target: 5'- gGGCGcUCCgCCCGUCGg--GGgGACGGg -3' miRNA: 3'- gCCGC-AGG-GGGCAGCggaUCgUUGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 120060 | 0.66 | 0.774297 |
Target: 5'- gGGCGUgggguacacggCCgCCGUgGCCacGGCGGCGGu -3' miRNA: 3'- gCCGCA-----------GGgGGCAgCGGa-UCGUUGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 154486 | 0.66 | 0.774297 |
Target: 5'- gGGCucgaGUCgUCCGUCGUCgggcgggcgGGCGGCGGa -3' miRNA: 3'- gCCG----CAGgGGGCAGCGGa--------UCGUUGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 87328 | 0.66 | 0.774297 |
Target: 5'- gGGCGagCCCCGUgGCCUcGGUggacugcagGAUGAc -3' miRNA: 3'- gCCGCagGGGGCAgCGGA-UCG---------UUGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 73379 | 0.66 | 0.774297 |
Target: 5'- cCGGUGUCCCCCaUCccgcugggccaGCCcGGCGcCGGc -3' miRNA: 3'- -GCCGCAGGGGGcAG-----------CGGaUCGUuGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 83837 | 0.66 | 0.774297 |
Target: 5'- gGGCG-CCCggCCGUCuCCggggggAGCGGCGGg -3' miRNA: 3'- gCCGCaGGG--GGCAGcGGa-----UCGUUGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 1939 | 0.66 | 0.774297 |
Target: 5'- gGGCGcUCCgCCCGUCGg--GGgGACGGg -3' miRNA: 3'- gCCGC-AGG-GGGCAGCggaUCgUUGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 96749 | 0.66 | 0.772492 |
Target: 5'- uCGGCGUCUacgugcggcgcgCCGUCGCgaggaGGCGGCGGg -3' miRNA: 3'- -GCCGCAGGg-----------GGCAGCGga---UCGUUGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 16167 | 0.66 | 0.76887 |
Target: 5'- cCGGCG-CgCCCGacugggggcgcucgaUCGCC-AGCAGCGc -3' miRNA: 3'- -GCCGCaGgGGGC---------------AGCGGaUCGUUGCu -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 123901 | 0.66 | 0.765229 |
Target: 5'- gGGCGgCCCCgaCGUcCGCCaugcuGCGGCGGg -3' miRNA: 3'- gCCGCaGGGG--GCA-GCGGau---CGUUGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 154802 | 0.66 | 0.765229 |
Target: 5'- gGGCGgCCCCgaCGUcCGCCaugcuGCGGCGGg -3' miRNA: 3'- gCCGCaGGGG--GCA-GCGGau---CGUUGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 65531 | 0.66 | 0.765229 |
Target: 5'- uGGCGcCCCCCcUCGCCcccGGUcuuCGAg -3' miRNA: 3'- gCCGCaGGGGGcAGCGGa--UCGuu-GCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 103542 | 0.66 | 0.765229 |
Target: 5'- gGGCGgCCCUugagCGcCGCCUGGCggUGc -3' miRNA: 3'- gCCGCaGGGG----GCaGCGGAUCGuuGCu -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 12903 | 0.66 | 0.765229 |
Target: 5'- uCGGUG-CCCCCGggGCggcGCGGCGAg -3' miRNA: 3'- -GCCGCaGGGGGCagCGgauCGUUGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 34869 | 0.66 | 0.765229 |
Target: 5'- cCGGCGcCCCCC--CGCCgcGCGcCGGc -3' miRNA: 3'- -GCCGCaGGGGGcaGCGGauCGUuGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 3968 | 0.66 | 0.765229 |
Target: 5'- cCGGCGcCCCCC--CGCCgcGCGcCGGc -3' miRNA: 3'- -GCCGCaGGGGGcaGCGGauCGUuGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 42204 | 0.66 | 0.765229 |
Target: 5'- aGGCGUCUCCCGUUGacuaCCUGacGCc-CGAg -3' miRNA: 3'- gCCGCAGGGGGCAGC----GGAU--CGuuGCU- -5' |
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21444 | 5' | -59.9 | NC_004812.1 | + | 34604 | 0.66 | 0.765229 |
Target: 5'- gGGCcauGUCCCCCGaUCGCacgaCGGCGGg -3' miRNA: 3'- gCCG---CAGGGGGC-AGCGgaucGUUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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