miRNA display CGI


Results 21 - 40 of 908 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21446 5' -58 NC_004812.1 + 153635 0.66 0.868874
Target:  5'- gGCCGgcccAUGCGggcggGCGgGGagagGGCGCGCa -3'
miRNA:   3'- aCGGCa---UGUGCa----CGUgCCg---CUGCGCG- -5'
21446 5' -58 NC_004812.1 + 77485 0.66 0.868874
Target:  5'- cUGCCGaccagaACGCGgcgauccGCGCGGC-ACGcCGCu -3'
miRNA:   3'- -ACGGCa-----UGUGCa------CGUGCCGcUGC-GCG- -5'
21446 5' -58 NC_004812.1 + 131763 0.66 0.868874
Target:  5'- aGCCGcGC-CGccCGCGGCG-CGUGCc -3'
miRNA:   3'- aCGGCaUGuGCacGUGCCGCuGCGCG- -5'
21446 5' -58 NC_004812.1 + 83347 0.66 0.868874
Target:  5'- aGCCuggACGCGcUGC-UGGCGGCcCGCc -3'
miRNA:   3'- aCGGca-UGUGC-ACGuGCCGCUGcGCG- -5'
21446 5' -58 NC_004812.1 + 130341 0.66 0.868874
Target:  5'- cGUCGgcguccagggGCACGgccCGCGGCGGCGCn- -3'
miRNA:   3'- aCGGCa---------UGUGCac-GUGCCGCUGCGcg -5'
21446 5' -58 NC_004812.1 + 28571 0.66 0.868874
Target:  5'- cGCCGcGC-CGUGCugcccgcgcucgACGGCcGCGcCGCc -3'
miRNA:   3'- aCGGCaUGuGCACG------------UGCCGcUGC-GCG- -5'
21446 5' -58 NC_004812.1 + 30081 0.66 0.868874
Target:  5'- gGCCGggcccuCGCGgggGCGCGGCcccGGcCGgGCa -3'
miRNA:   3'- aCGGCau----GUGCa--CGUGCCG---CU-GCgCG- -5'
21446 5' -58 NC_004812.1 + 156167 0.66 0.868874
Target:  5'- gGcCCGggcuCGCGgcggGCGCGcGCGAgagcgcCGCGCg -3'
miRNA:   3'- aC-GGCau--GUGCa---CGUGC-CGCU------GCGCG- -5'
21446 5' -58 NC_004812.1 + 128706 0.66 0.868874
Target:  5'- gGCgGcgGCGCG-GCGCaGCGggcccgagGCGCGCg -3'
miRNA:   3'- aCGgCa-UGUGCaCGUGcCGC--------UGCGCG- -5'
21446 5' -58 NC_004812.1 + 135809 0.66 0.868874
Target:  5'- gGCUGUGCgGCGgccugGCGCaGCGcCuGCGCu -3'
miRNA:   3'- aCGGCAUG-UGCa----CGUGcCGCuG-CGCG- -5'
21446 5' -58 NC_004812.1 + 99684 0.66 0.868874
Target:  5'- cGCCcuccagGUcCGCGccGUGCGGCGGCGCcuGCg -3'
miRNA:   3'- aCGG------CAuGUGCa-CGUGCCGCUGCG--CG- -5'
21446 5' -58 NC_004812.1 + 35574 0.66 0.868874
Target:  5'- gGCCGU-CGCGcGC-CGGCGccgaggggaGCGCc -3'
miRNA:   3'- aCGGCAuGUGCaCGuGCCGCug-------CGCG- -5'
21446 5' -58 NC_004812.1 + 43688 0.66 0.868874
Target:  5'- cGCgGgcCGCGcUGCcuucGCGGCGAgGgCGCu -3'
miRNA:   3'- aCGgCauGUGC-ACG----UGCCGCUgC-GCG- -5'
21446 5' -58 NC_004812.1 + 125266 0.66 0.868874
Target:  5'- gGcCCGggcuCGCGgcggGCGCGcGCGAgagcgcCGCGCg -3'
miRNA:   3'- aC-GGCau--GUGCa---CGUGC-CGCU------GCGCG- -5'
21446 5' -58 NC_004812.1 + 130972 0.66 0.868874
Target:  5'- gGCCGcccGCGCGcUGCuguuccgcuacuGCGuGgGGCGCGCc -3'
miRNA:   3'- aCGGCa--UGUGC-ACG------------UGC-CgCUGCGCG- -5'
21446 5' -58 NC_004812.1 + 13323 0.66 0.868148
Target:  5'- cGCCGggGguCGgggGUGCGGCGGucccuucCGCGCc -3'
miRNA:   3'- aCGGCa-UguGCa--CGUGCCGCU-------GCGCG- -5'
21446 5' -58 NC_004812.1 + 80224 0.66 0.864491
Target:  5'- cGCCGggccauCGCGcGCcucggcgcccuggggGCGGCGGC-CGCg -3'
miRNA:   3'- aCGGCau----GUGCaCG---------------UGCCGCUGcGCG- -5'
21446 5' -58 NC_004812.1 + 39555 0.66 0.864491
Target:  5'- gGCCGUcgcgggcgaugagcgGCugGUGCACcucgaacuGC-ACGCGCc -3'
miRNA:   3'- aCGGCA---------------UGugCACGUGc-------CGcUGCGCG- -5'
21446 5' -58 NC_004812.1 + 87651 0.66 0.864491
Target:  5'- cGCUGUAuCAggcccucgaaggaguCG-GCGCGGCGGucCGCGUa -3'
miRNA:   3'- aCGGCAU-GU---------------GCaCGUGCCGCU--GCGCG- -5'
21446 5' -58 NC_004812.1 + 90667 0.66 0.861529
Target:  5'- cGuUCGUGCuCGUgGUGCGGCGcgGCGCGg -3'
miRNA:   3'- aC-GGCAUGuGCA-CGUGCCGC--UGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.