miRNA display CGI

Results 1 - 20 of 828 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21451	3'	-67.7	NC_004812.1	+	27734	0.66	0.437506
	Target:  5'- -----gGCGGGGgGcCGCGGUCAgcGGGCc -3' miRNA:   3'- aggaggCGCCCCgC-GCGCCGGU--CCCG- -5'
21451	3'	-67.7	NC_004812.1	+	122157	0.66	0.437506
	Target:  5'- gCCUgaguUCGgGccuGGGCGCG-GGCCuGGGCc -3' miRNA:   3'- aGGA----GGCgC---CCCGCGCgCCGGuCCCG- -5'
21451	3'	-67.7	NC_004812.1	+	99949	0.66	0.437506
	Target:  5'- gCCgcgcCCGCGucgugccgguGGGcCGUGcCGGCgGGGGCc -3' miRNA:   3'- aGGa---GGCGC----------CCC-GCGC-GCCGgUCCCG- -5'
21451	3'	-67.7	NC_004812.1	+	140562	0.66	0.437506
	Target:  5'- cUCC-CCGCggugaucgGGGGCcucuGCGCGcugacccuggccGCCAuGGGCg -3' miRNA:   3'- -AGGaGGCG--------CCCCG----CGCGC------------CGGU-CCCG- -5'
21451	3'	-67.7	NC_004812.1	+	5039	0.66	0.437506
	Target:  5'- -----gGCGGGGCaGCGCcgcggucacgggGGCCcGGGCg -3' miRNA:   3'- aggaggCGCCCCG-CGCG------------CCGGuCCCG- -5'
21451	3'	-67.7	NC_004812.1	+	25890	0.66	0.437506
	Target:  5'- cCCUcCCGCGGcGCcCGCGcccagcGCCGcGGGCg -3' miRNA:   3'- aGGA-GGCGCCcCGcGCGC------CGGU-CCCG- -5'
21451	3'	-67.7	NC_004812.1	+	28649	0.66	0.437506
	Target:  5'- gCCUCCGac--GCGCccgccggacugGCGGCCGGGGa -3' miRNA:   3'- aGGAGGCgcccCGCG-----------CGCCGGUCCCg -5'
21451	3'	-67.7	NC_004812.1	+	17801	0.66	0.437506
	Target:  5'- cCCUCCgGCccgucaaagagGGGGUuCGCGGCCAcgacccaGGCg -3' miRNA:   3'- aGGAGG-CG-----------CCCCGcGCGCCGGUc------CCG- -5'
21451	3'	-67.7	NC_004812.1	+	146190	0.66	0.437506
	Target:  5'- ----aCGCGGuGGaCGCgGgGGUCGGGGCg -3' miRNA:   3'- aggagGCGCC-CC-GCG-CgCCGGUCCCG- -5'
21451	3'	-67.7	NC_004812.1	+	94598	0.66	0.437506
	Target:  5'- uUCCcggCCGUGcGGucgaGC-CGCGGCCccuGGGCg -3' miRNA:   3'- -AGGa--GGCGC-CC----CGcGCGCCGGu--CCCG- -5'
21451	3'	-67.7	NC_004812.1	+	106222	0.66	0.437506
	Target:  5'- cUUCUgCGCGGuGGUGCaCGcGCCcccggcgucgGGGGCg -3' miRNA:   3'- -AGGAgGCGCC-CCGCGcGC-CGG----------UCCCG- -5'
21451	3'	-67.7	NC_004812.1	+	26453	0.66	0.437506
	Target:  5'- gUCC-CCGaggacgaGGGGUcgcuugcucucuGCGCGGgCGGGGg -3' miRNA:   3'- -AGGaGGCg------CCCCG------------CGCGCCgGUCCCg -5'
21451	3'	-67.7	NC_004812.1	+	89992	0.66	0.437506
	Target:  5'- cCCgugCCGaCGgccuGGGCGUggaGCGGCCcgcGGGCc -3' miRNA:   3'- aGGa--GGC-GC----CCCGCG---CGCCGGu--CCCG- -5'
21451	3'	-67.7	NC_004812.1	+	67798	0.66	0.437506
	Target:  5'- -gCUUCGgGGGGgGCG-GGCCc-GGCa -3' miRNA:   3'- agGAGGCgCCCCgCGCgCCGGucCCG- -5'
21451	3'	-67.7	NC_004812.1	+	107217	0.66	0.437506
	Target:  5'- -gCgggCCGCcuGGGCGuCGaGGCaCAGGGCg -3' miRNA:   3'- agGa--GGCGc-CCCGC-GCgCCG-GUCCCG- -5'
21451	3'	-67.7	NC_004812.1	+	99233	0.66	0.437506
	Target:  5'- gCgUCgGCgGGGGCGgG-GGCCGuccGGGCc -3' miRNA:   3'- aGgAGgCG-CCCCGCgCgCCGGU---CCCG- -5'
21451	3'	-67.7	NC_004812.1	+	35940	0.66	0.437506
	Target:  5'- -----gGCGGGGCaGCGCcgcggucacgggGGCCcGGGCg -3' miRNA:   3'- aggaggCGCCCCG-CGCG------------CCGGuCCCG- -5'
21451	3'	-67.7	NC_004812.1	+	74574	0.66	0.437506
	Target:  5'- gUCCU-CGCGGaGGCGgGCcagcaGGCCGucGuGGCg -3' miRNA:   3'- -AGGAgGCGCC-CCGCgCG-----CCGGU--C-CCG- -5'
21451	3'	-67.7	NC_004812.1	+	153058	0.66	0.437506
	Target:  5'- gCCUgaguUCGgGccuGGGCGCG-GGCCuGGGCc -3' miRNA:   3'- aGGA----GGCgC---CCCGCGCgCCGGuCCCG- -5'
21451	3'	-67.7	NC_004812.1	+	94694	0.66	0.437506
	Target:  5'- cCCgcgCgGCGGcGCGUGCGGCCcGaGCa -3' miRNA:   3'- aGGa--GgCGCCcCGCGCGCCGGuCcCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home