miRNA display CGI


Results 1 - 20 of 304 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21451 5' -52.8 NC_004812.1 + 59495 0.66 0.98841
Target:  5'- gCCGCCGcGGCgGCG-CGgccccCGgcGGACa -3'
miRNA:   3'- -GGCGGCuCUGgCGCaGCa----GCauUUUG- -5'
21451 5' -52.8 NC_004812.1 + 50693 0.66 0.98841
Target:  5'- gUCGCCGGGgacucggcgaGCCGCGcCGcCGUucgcccacgggAGAGCu -3'
miRNA:   3'- -GGCGGCUC----------UGGCGCaGCaGCA-----------UUUUG- -5'
21451 5' -52.8 NC_004812.1 + 143993 0.66 0.98841
Target:  5'- aCCGCuCGcGGCgGCGUCuUCGUGu--- -3'
miRNA:   3'- -GGCG-GCuCUGgCGCAGcAGCAUuuug -5'
21451 5' -52.8 NC_004812.1 + 133639 0.66 0.98841
Target:  5'- aCCGCC-AGcAUCaGCGUCGcCGUAAcGGCg -3'
miRNA:   3'- -GGCGGcUC-UGG-CGCAGCaGCAUU-UUG- -5'
21451 5' -52.8 NC_004812.1 + 152786 0.66 0.98841
Target:  5'- gCGCgGGGAccuCCGCGUCGcCGg----- -3'
miRNA:   3'- gGCGgCUCU---GGCGCAGCaGCauuuug -5'
21451 5' -52.8 NC_004812.1 + 16841 0.66 0.98841
Target:  5'- gCCGCCGcccuuAGGCgCGCGgUCG-CGggGGACc -3'
miRNA:   3'- -GGCGGC-----UCUG-GCGC-AGCaGCauUUUG- -5'
21451 5' -52.8 NC_004812.1 + 43528 0.66 0.98841
Target:  5'- uCCGCCGcGGCgGUGUCG-CGgcucGCu -3'
miRNA:   3'- -GGCGGCuCUGgCGCAGCaGCauuuUG- -5'
21451 5' -52.8 NC_004812.1 + 27278 0.66 0.98841
Target:  5'- gCGCgGGGAccuCCGCGUCGcCGg----- -3'
miRNA:   3'- gGCGgCUCU---GGCGCAGCaGCauuuug -5'
21451 5' -52.8 NC_004812.1 + 51752 0.66 0.98841
Target:  5'- aCCGCCGcGGCCGCcggCG-CGgccaAGAGCc -3'
miRNA:   3'- -GGCGGCuCUGGCGca-GCaGCa---UUUUG- -5'
21451 5' -52.8 NC_004812.1 + 8304 0.66 0.98841
Target:  5'- gCGCCGGGAgcuCCGCG-CGUaCGcc-GACg -3'
miRNA:   3'- gGCGGCUCU---GGCGCaGCA-GCauuUUG- -5'
21451 5' -52.8 NC_004812.1 + 68404 0.66 0.98841
Target:  5'- gCCGuCCGGGGCCGCGgcUCGccccgCGgccgAGAGg -3'
miRNA:   3'- -GGC-GGCUCUGGCGC--AGCa----GCa---UUUUg -5'
21451 5' -52.8 NC_004812.1 + 21061 0.66 0.9869
Target:  5'- uCCGCCG-GGCUGaCGUCGgggCGgagguACu -3'
miRNA:   3'- -GGCGGCuCUGGC-GCAGCa--GCauuu-UG- -5'
21451 5' -52.8 NC_004812.1 + 15129 0.66 0.9869
Target:  5'- gCGCgCGuccGGCCGCGUCGccUCG-GGGGCu -3'
miRNA:   3'- gGCG-GCu--CUGGCGCAGC--AGCaUUUUG- -5'
21451 5' -52.8 NC_004812.1 + 85095 0.66 0.9869
Target:  5'- gCCGCCGAGGCCGUc-CGcacccaCGUGAc-- -3'
miRNA:   3'- -GGCGGCUCUGGCGcaGCa-----GCAUUuug -5'
21451 5' -52.8 NC_004812.1 + 71007 0.66 0.9869
Target:  5'- gCCGCCaGGGCCGCcaggggaaaGUCGgCGUu--GCg -3'
miRNA:   3'- -GGCGGcUCUGGCG---------CAGCaGCAuuuUG- -5'
21451 5' -52.8 NC_004812.1 + 71797 0.66 0.9869
Target:  5'- gUCGCCGAaGCCGuCGUgG-CGUGGGGg -3'
miRNA:   3'- -GGCGGCUcUGGC-GCAgCaGCAUUUUg -5'
21451 5' -52.8 NC_004812.1 + 42597 0.66 0.9869
Target:  5'- aCGgCGAGACCGUGcugCGcaUCGUAGc-- -3'
miRNA:   3'- gGCgGCUCUGGCGCa--GC--AGCAUUuug -5'
21451 5' -52.8 NC_004812.1 + 62666 0.66 0.9869
Target:  5'- aCGCCcgaGGGACggCGCGUCGcCGUGc--- -3'
miRNA:   3'- gGCGG---CUCUG--GCGCAGCaGCAUuuug -5'
21451 5' -52.8 NC_004812.1 + 37108 0.66 0.9869
Target:  5'- gCCGUCGAGGCgGUGUuggcgcccgCGUCGg----- -3'
miRNA:   3'- -GGCGGCUCUGgCGCA---------GCAGCauuuug -5'
21451 5' -52.8 NC_004812.1 + 116181 0.66 0.9869
Target:  5'- aUGCCGGGGCCGCGccaaaaccCGcCGgaggAAAAUg -3'
miRNA:   3'- gGCGGCUCUGGCGCa-------GCaGCa---UUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.