Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 21452 | 3' | -59.9 | NC_004812.1 | + | 92576 | 0.66 | 0.739108 |
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Target: 5'- gGCCgucgucgCCUGGCUggCGgcggcgaagcggccCUGGUUGUCCg -3' miRNA: 3'- -CGGaa-----GGACCGGa-GC--------------GACCGACAGGa -5' |
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| 21452 | 3' | -59.9 | NC_004812.1 | + | 100427 | 0.66 | 0.751465 |
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Target: 5'- cGUCUUCCaGGCCaccaCGCccgGGCUGUacgCCa -3' miRNA: 3'- -CGGAAGGaCCGGa---GCGa--CCGACA---GGa -5' |
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| 21452 | 3' | -59.9 | NC_004812.1 | + | 27812 | 0.66 | 0.741974 |
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Target: 5'- cGCCUUCgacccgcgcgcgCUGGCCUCGCUcgccgcGcGCUGcggCCc -3' miRNA: 3'- -CGGAAG------------GACCGGAGCGA------C-CGACa--GGa -5' |
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| 21452 | 3' | -59.9 | NC_004812.1 | + | 101471 | 0.66 | 0.703175 |
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Target: 5'- gGCCagcUCCUGGCC---CUGGCgcaggGUCCg -3' miRNA: 3'- -CGGa--AGGACCGGagcGACCGa----CAGGa -5' |
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| 21452 | 3' | -59.9 | NC_004812.1 | + | 153320 | 0.66 | 0.741974 |
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Target: 5'- cGCCUUCgacccgcgcgcgCUGGCCUCGCUcgccgcGcGCUGcggCCc -3' miRNA: 3'- -CGGAAG------------GACCGGAGCGA------C-CGACa--GGa -5' |
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| 21452 | 3' | -59.9 | NC_004812.1 | + | 145355 | 0.66 | 0.741974 |
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Target: 5'- gGCCguggggCUGGCCgUUGCcGGCcUGUCCg -3' miRNA: 3'- -CGGaag---GACCGG-AGCGaCCG-ACAGGa -5' |
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| 21452 | 3' | -59.9 | NC_004812.1 | + | 58946 | 0.66 | 0.722724 |
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Target: 5'- gGCCg-CCUGGCCUgcCGUgaGGCUGggggCCg -3' miRNA: 3'- -CGGaaGGACCGGA--GCGa-CCGACa---GGa -5' |
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| 21452 | 3' | -59.9 | NC_004812.1 | + | 116957 | 0.66 | 0.751465 |
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Target: 5'- uGCgCUUCCUGGagCUCG--GGCUGUCg- -3' miRNA: 3'- -CG-GAAGGACCg-GAGCgaCCGACAGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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