Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 21452 | 3' | -59.9 | NC_004812.1 | + | 79225 | 0.7 | 0.514812 |
|
Target: 5'- cGCCgaCCUGGCCgccugGCUGGC-GUCgCUg -3' miRNA: 3'- -CGGaaGGACCGGag---CGACCGaCAG-GA- -5' |
|||||||
| 21452 | 3' | -59.9 | NC_004812.1 | + | 113958 | 0.7 | 0.514812 |
|
Target: 5'- cGCCUgggaUGGCgUCGCgggGGCguUGUCCUg -3' miRNA: 3'- -CGGAagg-ACCGgAGCGa--CCG--ACAGGA- -5' |
|||||||
| 21452 | 3' | -59.9 | NC_004812.1 | + | 105384 | 0.7 | 0.486432 |
|
Target: 5'- cGCCgcgaUGGUCUCGCUGGCgccgGUgCCg -3' miRNA: 3'- -CGGaaggACCGGAGCGACCGa---CA-GGa -5' |
|||||||
| 21452 | 3' | -59.9 | NC_004812.1 | + | 15190 | 0.7 | 0.480844 |
|
Target: 5'- cGCCcUCCgGGCCUCGCU-GCUGgacuuugcgcgcggCCUg -3' miRNA: 3'- -CGGaAGGaCCGGAGCGAcCGACa-------------GGA- -5' |
|||||||
| 21452 | 3' | -59.9 | NC_004812.1 | + | 104176 | 0.71 | 0.440875 |
|
Target: 5'- uGCUggUCCUGGCCggGCUGGCggcggCCUu -3' miRNA: 3'- -CGGa-AGGACCGGagCGACCGaca--GGA- -5' |
|||||||
| 21452 | 3' | -59.9 | NC_004812.1 | + | 146509 | 0.75 | 0.273098 |
|
Target: 5'- gGCCgugggCCUGGCCggGCUGGUgauagggGUCCUg -3' miRNA: 3'- -CGGaa---GGACCGGagCGACCGa------CAGGA- -5' |
|||||||
| 21452 | 3' | -59.9 | NC_004812.1 | + | 137221 | 0.75 | 0.273098 |
|
Target: 5'- cGCCgUCCUGGCCcUGCUGGaC-GUCCg -3' miRNA: 3'- -CGGaAGGACCGGaGCGACC-GaCAGGa -5' |
|||||||
| 21452 | 3' | -59.9 | NC_004812.1 | + | 90380 | 1.1 | 0.001035 |
|
Target: 5'- cGCCUUCCUGGCCUCGCUGGCUGUCCUg -3' miRNA: 3'- -CGGAAGGACCGGAGCGACCGACAGGA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home