miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21452 5' -56.4 NC_004812.1 + 83008 0.66 0.904532
Target:  5'- gCCGGGGCG-AUCCUcuucgUGCAGcGCCUGa -3'
miRNA:   3'- -GGUCCUGUaUGGGG-----ACGUCcUGGACg -5'
21452 5' -56.4 NC_004812.1 + 73069 0.66 0.904532
Target:  5'- cCCGGaGACcgcGCUCCUcGCGgagaacuuaccGGGCCUGCu -3'
miRNA:   3'- -GGUC-CUGua-UGGGGA-CGU-----------CCUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 128554 0.66 0.904532
Target:  5'- cCCAcGGACGgauggaugaGCUCCgagGaCAGcGACCUGCu -3'
miRNA:   3'- -GGU-CCUGUa--------UGGGGa--C-GUC-CUGGACG- -5'
21452 5' -56.4 NC_004812.1 + 93300 0.66 0.904532
Target:  5'- gCAGGAUGUGCUCCagGCGGGuggugGCCa-- -3'
miRNA:   3'- gGUCCUGUAUGGGGa-CGUCC-----UGGacg -5'
21452 5' -56.4 NC_004812.1 + 112351 0.66 0.904532
Target:  5'- cCCAGGACAcagcggcgaucGCgCUCUGCcGGACUcGCg -3'
miRNA:   3'- -GGUCCUGUa----------UG-GGGACGuCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 48825 0.66 0.904532
Target:  5'- -gAGGGCGgccgGCCCCaGUaccgcuaccgcgAGGACCgGCu -3'
miRNA:   3'- ggUCCUGUa---UGGGGaCG------------UCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 222 0.66 0.904532
Target:  5'- -gGGGGCccaagGCUCCcGCGGGGCCcaagGCu -3'
miRNA:   3'- ggUCCUGua---UGGGGaCGUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 31123 0.66 0.904532
Target:  5'- -gGGGGCccaagGCUCCcGCGGGGCCcaagGCu -3'
miRNA:   3'- ggUCCUGua---UGGGGaCGUCCUGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 87323 0.66 0.904532
Target:  5'- gCCgAGGGCGaGCCCCguggccucGguGGA-CUGCa -3'
miRNA:   3'- -GG-UCCUGUaUGGGGa-------CguCCUgGACG- -5'
21452 5' -56.4 NC_004812.1 + 76379 0.66 0.903912
Target:  5'- cCCAGGGCGccgaggcgcgcgaUGgCCCgGCGGGcGCCgaggGCc -3'
miRNA:   3'- -GGUCCUGU-------------AUgGGGaCGUCC-UGGa---CG- -5'
21452 5' -56.4 NC_004812.1 + 64369 0.66 0.898866
Target:  5'- aCCGGGAC-UACCUCgccaucgagguggggGgCAGGcGCCUGUu -3'
miRNA:   3'- -GGUCCUGuAUGGGGa--------------C-GUCC-UGGACG- -5'
21452 5' -56.4 NC_004812.1 + 81120 0.66 0.898225
Target:  5'- -gGGGGCGUGCC---GCuGGACCUGg -3'
miRNA:   3'- ggUCCUGUAUGGggaCGuCCUGGACg -5'
21452 5' -56.4 NC_004812.1 + 76818 0.66 0.898225
Target:  5'- gCAGGGCGgcgcgcACCUCcGgGGGcgcGCCUGCg -3'
miRNA:   3'- gGUCCUGUa-----UGGGGaCgUCC---UGGACG- -5'
21452 5' -56.4 NC_004812.1 + 133459 0.66 0.898225
Target:  5'- gCCAGGGCgcugacgcuGUGCgCCagcaGCAGGACggugauCUGCa -3'
miRNA:   3'- -GGUCCUG---------UAUGgGGa---CGUCCUG------GACG- -5'
21452 5' -56.4 NC_004812.1 + 119206 0.66 0.898225
Target:  5'- uCCuGGugGUGuccgcggcccCCCCUugccuguacccGCAGGGCCcGCu -3'
miRNA:   3'- -GGuCCugUAU----------GGGGA-----------CGUCCUGGaCG- -5'
21452 5' -56.4 NC_004812.1 + 96400 0.66 0.898225
Target:  5'- uUCGGGAgCGgcgagGCCgUCUGCAcGGccGCCUGCg -3'
miRNA:   3'- -GGUCCU-GUa----UGG-GGACGU-CC--UGGACG- -5'
21452 5' -56.4 NC_004812.1 + 100839 0.66 0.898225
Target:  5'- gCGGGGC-UGCCCagggGCAGGGC--GCg -3'
miRNA:   3'- gGUCCUGuAUGGGga--CGUCCUGgaCG- -5'
21452 5' -56.4 NC_004812.1 + 129675 0.66 0.898225
Target:  5'- gCGGGcugGCGguggACCUCUacgcgcugggGCAGGugCUGCu -3'
miRNA:   3'- gGUCC---UGUa---UGGGGA----------CGUCCugGACG- -5'
21452 5' -56.4 NC_004812.1 + 112486 0.66 0.898225
Target:  5'- gCgGGGGCucgacGCCCCggccgucagGCGGGcCCUGUu -3'
miRNA:   3'- -GgUCCUGua---UGGGGa--------CGUCCuGGACG- -5'
21452 5' -56.4 NC_004812.1 + 112542 0.66 0.898225
Target:  5'- aCCuGGAUAUgcuggucgACCUCgGCcuGGACCUGUc -3'
miRNA:   3'- -GGuCCUGUA--------UGGGGaCGu-CCUGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.