miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21457 3' -55.9 NC_004812.1 + 148691 0.66 0.925702
Target:  5'- cGCGGgGGaGGGAGGgcgAGGGgUGCGCGg -3'
miRNA:   3'- cUGCCgCCaCCCUCU---UUCUgGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 36583 0.66 0.925702
Target:  5'- cACGGgGGgccGGGGGucucccAGGGCCACGgGg -3'
miRNA:   3'- cUGCCgCCa--CCCUCu-----UUCUGGUGUgC- -5'
21457 3' -55.9 NC_004812.1 + 89056 0.66 0.925702
Target:  5'- -gUGGCGGcGGcGAGAGcuGCUGCACGc -3'
miRNA:   3'- cuGCCGCCaCC-CUCUUucUGGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 18104 0.66 0.925702
Target:  5'- cGugGuaCGuGUGGGAGuagcGGCCGCACGu -3'
miRNA:   3'- -CugCc-GC-CACCCUCuuu-CUGGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 156332 0.66 0.925167
Target:  5'- gGACGGCGGc-GGAGcgcgcgcgGGAGACCccccccuccucccGCGCGg -3'
miRNA:   3'- -CUGCCGCCacCCUC--------UUUCUGG-------------UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 125431 0.66 0.925167
Target:  5'- gGACGGCGGc-GGAGcgcgcgcgGGAGACCccccccuccucccGCGCGg -3'
miRNA:   3'- -CUGCCGCCacCCUC--------UUUCUGG-------------UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 7503 0.66 0.920799
Target:  5'- gGACGGUGGgccggagcgaaaggaGGGAGggGGGgCggcgauGCGCGg -3'
miRNA:   3'- -CUGCCGCCa--------------CCCUCuuUCUgG------UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 38404 0.66 0.920799
Target:  5'- gGACGGUGGgccggagcgaaaggaGGGAGggGGGgCggcgauGCGCGg -3'
miRNA:   3'- -CUGCCGCCa--------------CCCUCuuUCUgG------UGUGC- -5'
21457 3' -55.9 NC_004812.1 + 63137 0.66 0.920242
Target:  5'- -uCGGCccccGG-GGGAGggGGAgCCGcCGCGg -3'
miRNA:   3'- cuGCCG----CCaCCCUCuuUCU-GGU-GUGC- -5'
21457 3' -55.9 NC_004812.1 + 40747 0.66 0.920242
Target:  5'- cGCGGgGGagGGGAGggGGG-CGCGgGg -3'
miRNA:   3'- cUGCCgCCa-CCCUCuuUCUgGUGUgC- -5'
21457 3' -55.9 NC_004812.1 + 40084 0.66 0.920242
Target:  5'- gGGCGGCGGgcggcGGGcGGccGGgCGCGCGu -3'
miRNA:   3'- -CUGCCGCCa----CCCuCUuuCUgGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 40649 0.66 0.920242
Target:  5'- cGCGGgGGagGGGAGggGGG-CGCGgGg -3'
miRNA:   3'- cUGCCgCCa-CCCUCuuUCUgGUGUgC- -5'
21457 3' -55.9 NC_004812.1 + 90563 0.66 0.920242
Target:  5'- uAUGGCGG-GGGcGGAGAGGgCAC-CGu -3'
miRNA:   3'- cUGCCGCCaCCC-UCUUUCUgGUGuGC- -5'
21457 3' -55.9 NC_004812.1 + 17935 0.66 0.920242
Target:  5'- -cCGGuCGGgggGGGAGAGGGGgucgcCCGgGCGa -3'
miRNA:   3'- cuGCC-GCCa--CCCUCUUUCU-----GGUgUGC- -5'
21457 3' -55.9 NC_004812.1 + 40609 0.66 0.920242
Target:  5'- cGCGGgGGagGGGAGggGGG-CGCGgGg -3'
miRNA:   3'- cUGCCgCCa-CCCUCuuUCUgGUGUgC- -5'
21457 3' -55.9 NC_004812.1 + 99402 0.66 0.920242
Target:  5'- uGCGGCGGcUGGGGucGucGGGgCGCAUGa -3'
miRNA:   3'- cUGCCGCC-ACCCU--CuuUCUgGUGUGC- -5'
21457 3' -55.9 NC_004812.1 + 101176 0.66 0.918559
Target:  5'- aGGCGGCGGccucggguccggucUGcGGGGccAGGGGCCcCGCGg -3'
miRNA:   3'- -CUGCCGCC--------------AC-CCUC--UUUCUGGuGUGC- -5'
21457 3' -55.9 NC_004812.1 + 155162 0.66 0.914547
Target:  5'- gGGCGGUcGUGGGGGcGGGGACCGgggcccCGCa -3'
miRNA:   3'- -CUGCCGcCACCCUC-UUUCUGGU------GUGc -5'
21457 3' -55.9 NC_004812.1 + 124914 0.66 0.914547
Target:  5'- gGGCGGCGGcGGGGGcgGcGGCCcaucuccCGCGg -3'
miRNA:   3'- -CUGCCGCCaCCCUCuuU-CUGGu------GUGC- -5'
21457 3' -55.9 NC_004812.1 + 155815 0.66 0.914547
Target:  5'- gGGCGGCGGcGGGGGcgGcGGCCcaucuccCGCGg -3'
miRNA:   3'- -CUGCCGCCaCCCUCuuU-CUGGu------GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.