Results 21 - 40 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21457 | 5' | -64.8 | NC_004812.1 | + | 145024 | 0.66 | 0.546188 |
Target: 5'- cGCGCgGCgucccucCCCCCCGGUGCCc- -3' miRNA: 3'- uCGCG-UGaccac--GGGGGGCCACGGcc -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 137224 | 0.66 | 0.540574 |
Target: 5'- cGCGCGucCUGGUGCCCCggggcuacgaguacuUCGcG-GUCGGg -3' miRNA: 3'- uCGCGU--GACCACGGGG---------------GGC-CaCGGCC- -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 122200 | 0.66 | 0.536842 |
Target: 5'- gGGCGgGCUgucugGGcGCCgCCCCGGgggcggGCgCGGg -3' miRNA: 3'- -UCGCgUGA-----CCaCGG-GGGGCCa-----CG-GCC- -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 23811 | 0.66 | 0.536842 |
Target: 5'- uGCGCGCcgcgcgGGgcgGCgaCCCGGgGCCGGc -3' miRNA: 3'- uCGCGUGa-----CCa--CGggGGGCCaCGGCC- -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 45256 | 0.66 | 0.536842 |
Target: 5'- gGGCGacgaGCUGGgggGCCCgCgGG-GUCGGc -3' miRNA: 3'- -UCGCg---UGACCa--CGGGgGgCCaCGGCC- -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 122376 | 0.66 | 0.536842 |
Target: 5'- cGGgGCGC-GGcgGCCCCUCGG-GCCc- -3' miRNA: 3'- -UCgCGUGaCCa-CGGGGGGCCaCGGcc -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 153666 | 0.66 | 0.536842 |
Target: 5'- cGCGCAC-GGUGCgCCCgCCgagGGUGacgaggaCGGg -3' miRNA: 3'- uCGCGUGaCCACG-GGG-GG---CCACg------GCC- -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 153277 | 0.66 | 0.536842 |
Target: 5'- cGGgGCGC-GGcgGCCCCUCGG-GCCc- -3' miRNA: 3'- -UCgCGUGaCCa-CGGGGGGCCaCGGcc -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 153101 | 0.66 | 0.536842 |
Target: 5'- gGGCGgGCUgucugGGcGCCgCCCCGGgggcggGCgCGGg -3' miRNA: 3'- -UCGCgUGA-----CCaCGG-GGGGCCa-----CG-GCC- -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 125191 | 0.66 | 0.527552 |
Target: 5'- gGGCGCGC-GG-GCCcgCCCCGGccgcggcgGCCGu -3' miRNA: 3'- -UCGCGUGaCCaCGG--GGGGCCa-------CGGCc -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 156092 | 0.66 | 0.527552 |
Target: 5'- gGGCGCGC-GG-GCCcgCCCCGGccgcggcgGCCGu -3' miRNA: 3'- -UCGCGUGaCCaCGG--GGGGCCa-------CGGCc -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 110923 | 0.66 | 0.527552 |
Target: 5'- uGCuGCAgCUGGUGCCgUCCCGGggggGCUu- -3' miRNA: 3'- uCG-CGU-GACCACGG-GGGGCCa---CGGcc -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 15419 | 0.66 | 0.527552 |
Target: 5'- gAGCGCGCcgccccGG-GCCUCCgGGaGCUGGc -3' miRNA: 3'- -UCGCGUGa-----CCaCGGGGGgCCaCGGCC- -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 137323 | 0.66 | 0.524777 |
Target: 5'- cGGUGCACgccgGGccgggggcccUGCCCCCgauauucgccuuucUGGgGCCGGa -3' miRNA: 3'- -UCGCGUGa---CC----------ACGGGGG--------------GCCaCGGCC- -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 55036 | 0.66 | 0.518323 |
Target: 5'- cGGCGUGcCUGuacccGUGCCCCCaCGGgGCCu- -3' miRNA: 3'- -UCGCGU-GAC-----CACGGGGG-GCCaCGGcc -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 121743 | 0.66 | 0.518323 |
Target: 5'- cGGCGCGCggcgGGgggcgccgGgCCUCCGGgagGCgGGg -3' miRNA: 3'- -UCGCGUGa---CCa-------CgGGGGGCCa--CGgCC- -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 5591 | 0.66 | 0.518323 |
Target: 5'- gGGC-CACgggGGgggcgggGUCCCCCaGGggGCCGGa -3' miRNA: 3'- -UCGcGUGa--CCa------CGGGGGG-CCa-CGGCC- -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 36492 | 0.66 | 0.518323 |
Target: 5'- gGGC-CACggggGGggcgggGUCCCCCaGGggGCCGGa -3' miRNA: 3'- -UCGcGUGa---CCa-----CGGGGGG-CCa-CGGCC- -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 17186 | 0.66 | 0.515567 |
Target: 5'- gGGCcaGCACcGGccGCCCCggugucguucgcggCCGGUGCCGc -3' miRNA: 3'- -UCG--CGUGaCCa-CGGGG--------------GGCCACGGCc -5' |
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21457 | 5' | -64.8 | NC_004812.1 | + | 142185 | 0.66 | 0.509159 |
Target: 5'- uGGCGCGCUGGccggcgcggggcUGgCCgCCGGcgucgucgUGCUGGc -3' miRNA: 3'- -UCGCGUGACC------------ACgGGgGGCC--------ACGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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