miRNA display CGI

Results 21 - 40 of 1571 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21458	3'	-66.8	NC_004812.1	+	1996	0.66	0.47664
	Target:  5'- gGCGGGUC-CcGCCgGCGguCGCUCGGgGCg -3' miRNA:   3'- -CGCCCGGcGuCGG-UGC--GCGGGCCgCG- -5'
21458	3'	-66.8	NC_004812.1	+	79562	0.66	0.47664
	Target:  5'- cGCGaGcGCCuC-GCCGCGCGCgUGcGCGCc -3' miRNA:   3'- -CGC-C-CGGcGuCGGUGCGCGgGC-CGCG- -5'
21458	3'	-66.8	NC_004812.1	+	115863	0.66	0.47664
	Target:  5'- uCGGGgcucCCGC-GCCAacauCGUGCCgaUGGCGCu -3' miRNA:   3'- cGCCC----GGCGuCGGU----GCGCGG--GCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	22729	0.66	0.47664
	Target:  5'- -aGGGCgaCG-AGCCcgucuCGCGCgCGGCGUg -3' miRNA:   3'- cgCCCG--GCgUCGGu----GCGCGgGCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	112611	0.66	0.47664
	Target:  5'- uGCuGGCCuCGGCCAUGUGCaCCuccgacguGGCGg -3' miRNA:   3'- -CGcCCGGcGUCGGUGCGCG-GG--------CCGCg -5'
21458	3'	-66.8	NC_004812.1	+	125032	0.66	0.47664
	Target:  5'- cCGGGgaCGC-GCUccccucGCGcCGCCCGGgCGCg -3' miRNA:   3'- cGCCCg-GCGuCGG------UGC-GCGGGCC-GCG- -5'
21458	3'	-66.8	NC_004812.1	+	66217	0.66	0.47664
	Target:  5'- gGCGGuCCGCcaggacAGCCAgCGagGCCaggaaGGCGCg -3' miRNA:   3'- -CGCCcGGCG------UCGGU-GCg-CGGg----CCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	109021	0.66	0.47664
	Target:  5'- -gGGGUCGCcGCgACcccgaGCGCCCuccGCGCu -3' miRNA:   3'- cgCCCGGCGuCGgUG-----CGCGGGc--CGCG- -5'
21458	3'	-66.8	NC_004812.1	+	123500	0.66	0.47664
	Target:  5'- gGCGGGCCG-GGCCGgG-GCUCcaaGGcCGCg -3' miRNA:   3'- -CGCCCGGCgUCGGUgCgCGGG---CC-GCG- -5'
21458	3'	-66.8	NC_004812.1	+	152712	0.66	0.47664
	Target:  5'- gGCGGGg-GCGGCCucggagGCGgagGCCgGGCGCu -3' miRNA:   3'- -CGCCCggCGUCGG------UGCg--CGGgCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	97055	0.66	0.47664
	Target:  5'- cGCGaGGCCcaGCgauGGUCGCGCuggguCCCGaGCGCc -3' miRNA:   3'- -CGC-CCGG--CG---UCGGUGCGc----GGGC-CGCG- -5'
21458	3'	-66.8	NC_004812.1	+	17780	0.66	0.47664
	Target:  5'- uGCGGGgacaCGCAGCgGCGUcccUCCGGCcCg -3' miRNA:   3'- -CGCCCg---GCGUCGgUGCGc--GGGCCGcG- -5'
21458	3'	-66.8	NC_004812.1	+	81178	0.66	0.475768
	Target:  5'- cCGGcacgugcucccccGCCaGCAGCCugGaCGCgCgGGCGUg -3' miRNA:   3'- cGCC-------------CGG-CGUCGGugC-GCG-GgCCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	77103	0.66	0.474896
	Target:  5'- gGC-GGCCGCcauGGCCuuggccugguggaGCGCGUCCucggccaGGCGCn -3' miRNA:   3'- -CGcCCGGCG---UCGG-------------UGCGCGGG-------CCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	53698	0.66	0.474025
	Target:  5'- uCGcGGCCGCccccccgaggcgccGGuCCGC-CGCCCcGCGCa -3' miRNA:   3'- cGC-CCGGCG--------------UC-GGUGcGCGGGcCGCG- -5'
21458	3'	-66.8	NC_004812.1	+	2444	0.66	0.474025
	Target:  5'- cGCGGugcgagugcgccucGCCGCGGCgGaa-GUCCGGgGCg -3' miRNA:   3'- -CGCC--------------CGGCGUCGgUgcgCGGGCCgCG- -5'
21458	3'	-66.8	NC_004812.1	+	127952	0.66	0.474025
	Target:  5'- cGCGGugcgagugcgccucGCCGCGGCgGaa-GUCCGGgGCg -3' miRNA:   3'- -CGCC--------------CGGCGUCGgUgcgCGGGCCgCG- -5'
21458	3'	-66.8	NC_004812.1	+	95060	0.66	0.46795
	Target:  5'- cCGGcGCgaGCGGCUACGCGaCCGcCGCc -3' miRNA:   3'- cGCC-CGg-CGUCGGUGCGCgGGCcGCG- -5'
21458	3'	-66.8	NC_004812.1	+	39275	0.66	0.46795
	Target:  5'- gGCGGccGCCGgGGCCcgggguccggggGCGCGgCgGGgGCu -3' miRNA:   3'- -CGCC--CGGCgUCGG------------UGCGCgGgCCgCG- -5'
21458	3'	-66.8	NC_004812.1	+	115195	0.66	0.46795
	Target:  5'- gGgGGGCCGggaaAGCCGCGaggGCgaGGgGCg -3' miRNA:   3'- -CgCCCGGCg---UCGGUGCg--CGggCCgCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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