miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21458 5' -56 NC_004812.1 + 86525 1.07 0.003097
Target:  5'- uGAACAUCGGCUGCAGCUCCAGCGUGUg -3'
miRNA:   3'- -CUUGUAGCCGACGUCGAGGUCGCACA- -5'
21458 5' -56 NC_004812.1 + 3700 0.72 0.542435
Target:  5'- aGAGCAggUCGGCgGCGGCggcgCCGGCGg-- -3'
miRNA:   3'- -CUUGU--AGCCGaCGUCGa---GGUCGCaca -5'
21458 5' -56 NC_004812.1 + 129208 0.72 0.542435
Target:  5'- aGAGCAggUCGGCgGCGGCggcgCCGGCGg-- -3'
miRNA:   3'- -CUUGU--AGCCGaCGUCGa---GGUCGCaca -5'
21458 5' -56 NC_004812.1 + 112770 0.71 0.634989
Target:  5'- cGGAC-UCGGCgccgcgagccgcgcgGCGGCUCCcccgucgGGCGUGUg -3'
miRNA:   3'- -CUUGuAGCCGa--------------CGUCGAGG-------UCGCACA- -5'
21458 5' -56 NC_004812.1 + 113061 0.7 0.696906
Target:  5'- cGGCGUCGGCcGCGGCggCAGCGa-- -3'
miRNA:   3'- cUUGUAGCCGaCGUCGagGUCGCaca -5'
21458 5' -56 NC_004812.1 + 84717 0.69 0.717196
Target:  5'- -cGCGUCGGacgGCGGCUCCgAGCGc-- -3'
miRNA:   3'- cuUGUAGCCga-CGUCGAGG-UCGCaca -5'
21458 5' -56 NC_004812.1 + 45485 0.69 0.717196
Target:  5'- cGAGCAU-GGCgGCGGC-CCGGCGUc- -3'
miRNA:   3'- -CUUGUAgCCGaCGUCGaGGUCGCAca -5'
21458 5' -56 NC_004812.1 + 67709 0.69 0.717196
Target:  5'- aGAACGUcuccCGGagcucCUGCAGCagCAGCGUGUu -3'
miRNA:   3'- -CUUGUA----GCC-----GACGUCGagGUCGCACA- -5'
21458 5' -56 NC_004812.1 + 27210 0.69 0.747047
Target:  5'- cGACG-CGGC-GuCAGCgUCCAGCGUGa -3'
miRNA:   3'- cUUGUaGCCGaC-GUCG-AGGUCGCACa -5'
21458 5' -56 NC_004812.1 + 87041 0.69 0.747047
Target:  5'- cGGAgG-CGGCUGCGGCgcggCCGGCGc-- -3'
miRNA:   3'- -CUUgUaGCCGACGUCGa---GGUCGCaca -5'
21458 5' -56 NC_004812.1 + 43191 0.69 0.753887
Target:  5'- cGAACGUgCGGUacaggcuggggccgUGCAGCgCCAGCGUc- -3'
miRNA:   3'- -CUUGUA-GCCG--------------ACGUCGaGGUCGCAca -5'
21458 5' -56 NC_004812.1 + 103341 0.68 0.770268
Target:  5'- -cGCG-CGGCUGCAGUucacguacgaccacaUCCAGCGg-- -3'
miRNA:   3'- cuUGUaGCCGACGUCG---------------AGGUCGCaca -5'
21458 5' -56 NC_004812.1 + 31617 0.68 0.775965
Target:  5'- cGGCGUCGGCgccggcGCGGUcgCCGGCGgggGUg -3'
miRNA:   3'- cUUGUAGCCGa-----CGUCGa-GGUCGCa--CA- -5'
21458 5' -56 NC_004812.1 + 716 0.68 0.775965
Target:  5'- cGGCGUCGGCgccggcGCGGUcgCCGGCGgggGUg -3'
miRNA:   3'- cUUGUAGCCGa-----CGUCGa-GGUCGCa--CA- -5'
21458 5' -56 NC_004812.1 + 102976 0.68 0.785352
Target:  5'- ---aGUCGGUgucgucggGCAGCUCCAGCa--- -3'
miRNA:   3'- cuugUAGCCGa-------CGUCGAGGUCGcaca -5'
21458 5' -56 NC_004812.1 + 81805 0.68 0.785352
Target:  5'- cGGCGUCGGCcccgGGCUCCaggAGCGUGa -3'
miRNA:   3'- cUUGUAGCCGacg-UCGAGG---UCGCACa -5'
21458 5' -56 NC_004812.1 + 79337 0.67 0.829985
Target:  5'- gGGGCGggGGCggGCAGCgCCAGCGg-- -3'
miRNA:   3'- -CUUGUagCCGa-CGUCGaGGUCGCaca -5'
21458 5' -56 NC_004812.1 + 3393 0.67 0.83839
Target:  5'- aGGGCggCGGCgGagGGCgCCGGCGUGUg -3'
miRNA:   3'- -CUUGuaGCCGaCg-UCGaGGUCGCACA- -5'
21458 5' -56 NC_004812.1 + 128901 0.67 0.83839
Target:  5'- aGGGCggCGGCgGagGGCgCCGGCGUGUg -3'
miRNA:   3'- -CUUGuaGCCGaCg-UCGaGGUCGCACA- -5'
21458 5' -56 NC_004812.1 + 47653 0.67 0.845789
Target:  5'- cGAACGUCGGCgGCGaugcgccGCUCCA-CGUa- -3'
miRNA:   3'- -CUUGUAGCCGaCGU-------CGAGGUcGCAca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.