Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2146 | 5' | -58.8 | NC_001362.1 | + | 6073 | 0.67 | 0.086841 |
Target: 5'- cGGGGCCCccuuguugcucagGGAgCAGCGGGaacguugcAGGCUg- -3' miRNA: 3'- aCCCCGGG-------------UCUgGUCGUUU--------UCCGGau -5' |
|||||||
2146 | 5' | -58.8 | NC_001362.1 | + | 2365 | 0.67 | 0.087128 |
Target: 5'- aGGGGUCCAGGauuuugggUCAGCAcggagguuGGGCCc- -3' miRNA: 3'- aCCCCGGGUCU--------GGUCGUuu------UCCGGau -5' |
|||||||
2146 | 5' | -58.8 | NC_001362.1 | + | 3745 | 0.68 | 0.062487 |
Target: 5'- cUGGGGCCUuggcgucGGCCGGU----GGCCUAc -3' miRNA: 3'- -ACCCCGGGu------CUGGUCGuuuuCCGGAU- -5' |
|||||||
2146 | 5' | -58.8 | NC_001362.1 | + | 6090 | 0.73 | 0.025932 |
Target: 5'- gGGGGCCCcggGGGCgAGgaaUAGGGGGCCUGa -3' miRNA: 3'- aCCCCGGG---UCUGgUC---GUUUUCCGGAU- -5' |
|||||||
2146 | 5' | -58.8 | NC_001362.1 | + | 3597 | 1.06 | 2.9e-05 |
Target: 5'- gUGGGGCCCAGACCAGCAAAAGGCCUAc -3' miRNA: 3'- -ACCCCGGGUCUGGUCGUUUUCCGGAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home