miRNA display CGI


Results 21 - 40 of 400 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 3' -57.3 NC_004812.1 + 79327 0.66 0.855513
Target:  5'- uAACGAGCggaCGGu-GCGGCGGAGCu- -3'
miRNA:   3'- uUUGCUCGa--GCCccCGCCGCUUUGuc -5'
21461 3' -57.3 NC_004812.1 + 72063 0.66 0.855513
Target:  5'- ---gGGGCgcuGGGGGCGGCGGc---- -3'
miRNA:   3'- uuugCUCGag-CCCCCGCCGCUuuguc -5'
21461 3' -57.3 NC_004812.1 + 3700 0.66 0.855513
Target:  5'- ---aGAGCaggUCGGcGGCGGCGGcgccGGCGGa -3'
miRNA:   3'- uuugCUCG---AGCCcCCGCCGCU----UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 129208 0.66 0.855513
Target:  5'- ---aGAGCaggUCGGcGGCGGCGGcgccGGCGGa -3'
miRNA:   3'- uuugCUCG---AGCCcCCGCCGCU----UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 116967 0.66 0.855513
Target:  5'- ---gGAGCUCGGGcugucGGUGGCGu-GCGu -3'
miRNA:   3'- uuugCUCGAGCCC-----CCGCCGCuuUGUc -5'
21461 3' -57.3 NC_004812.1 + 23411 0.66 0.855513
Target:  5'- cGACGGGCgucCGGcGGcGuCGGCGAcGACGGu -3'
miRNA:   3'- uUUGCUCGa--GCC-CC-C-GCCGCU-UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 101028 0.66 0.855513
Target:  5'- uGGCGAGCcUGGGGcgcuGCGuGCGcGAGCAGc -3'
miRNA:   3'- uUUGCUCGaGCCCC----CGC-CGC-UUUGUC- -5'
21461 3' -57.3 NC_004812.1 + 93530 0.66 0.855513
Target:  5'- aGGAgGAGCggccggaGGGGGCcgugggGGCGGAGcCAGa -3'
miRNA:   3'- -UUUgCUCGag-----CCCCCG------CCGCUUU-GUC- -5'
21461 3' -57.3 NC_004812.1 + 148919 0.66 0.855513
Target:  5'- cGACGGGCgucCGGcGGcGuCGGCGAcGACGGu -3'
miRNA:   3'- uUUGCUCGa--GCC-CC-C-GCCGCU-UUGUC- -5'
21461 3' -57.3 NC_004812.1 + 145735 0.66 0.855513
Target:  5'- cGAACGcGGCgaccCGGGGcGCgcgGGCGGAGCGa -3'
miRNA:   3'- -UUUGC-UCGa---GCCCC-CG---CCGCUUUGUc -5'
21461 3' -57.3 NC_004812.1 + 147795 0.66 0.855513
Target:  5'- --cCGAGgcuCUCGGGGcUGGCGAGGCu- -3'
miRNA:   3'- uuuGCUC---GAGCCCCcGCCGCUUUGuc -5'
21461 3' -57.3 NC_004812.1 + 102228 0.66 0.855513
Target:  5'- --cCGGGCUCGucGGGCGGCccugccccGGAACAc -3'
miRNA:   3'- uuuGCUCGAGCc-CCCGCCG--------CUUUGUc -5'
21461 3' -57.3 NC_004812.1 + 108055 0.66 0.854737
Target:  5'- -uGCGGGCggugaGGGggaagucGGCGGCGguGCGGu -3'
miRNA:   3'- uuUGCUCGag---CCC-------CCGCCGCuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 45101 0.66 0.847662
Target:  5'- cGGCGGGCg-GGGGGCGugaguCGggGCGa -3'
miRNA:   3'- uUUGCUCGagCCCCCGCc----GCuuUGUc -5'
21461 3' -57.3 NC_004812.1 + 71067 0.66 0.847662
Target:  5'- cGGCG-GUUCGGGcGGC-GCGggGCGu -3'
miRNA:   3'- uUUGCuCGAGCCC-CCGcCGCuuUGUc -5'
21461 3' -57.3 NC_004812.1 + 37367 0.66 0.847662
Target:  5'- -cGCGGGCcCGGGGaGCGggcccuGCGGGuACAGg -3'
miRNA:   3'- uuUGCUCGaGCCCC-CGC------CGCUU-UGUC- -5'
21461 3' -57.3 NC_004812.1 + 133570 0.66 0.847662
Target:  5'- --uCGAGCUCGGcGgcguccugccGGCGGCGGuAGCGc -3'
miRNA:   3'- uuuGCUCGAGCC-C----------CCGCCGCU-UUGUc -5'
21461 3' -57.3 NC_004812.1 + 6466 0.66 0.847662
Target:  5'- -cGCGGGCcCGGGGaGCGggcccuGCGGGuACAGg -3'
miRNA:   3'- uuUGCUCGaGCCCC-CGC------CGCUU-UGUC- -5'
21461 3' -57.3 NC_004812.1 + 71481 0.66 0.847662
Target:  5'- -uGCGGGCgCaGGGGCaGCaGggGCAGc -3'
miRNA:   3'- uuUGCUCGaGcCCCCGcCG-CuuUGUC- -5'
21461 3' -57.3 NC_004812.1 + 123281 0.66 0.847662
Target:  5'- gGGAUGAgaaaccGCagGGGGGCGGgGggGaCGGg -3'
miRNA:   3'- -UUUGCU------CGagCCCCCGCCgCuuU-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.