miRNA display CGI


Results 21 - 40 of 1308 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21461 5' -69.2 NC_004812.1 + 105844 0.66 0.399083
Target:  5'- aCCAGCaCCCCCGgggcggaCACguaCUCGgCCCCg -3'
miRNA:   3'- gGGUCGcGGGGGC-------GUGg--GGGCgGGGG- -5'
21461 5' -69.2 NC_004812.1 + 142029 0.66 0.399083
Target:  5'- gCC-GCGCUggagacgCCCGCGggCCUGCCCCUg -3'
miRNA:   3'- gGGuCGCGG-------GGGCGUggGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 98935 0.66 0.395237
Target:  5'- gCCGGCGCCCggaagagacccggggCCGCggacgACCUguuuggcgaCgGCCCCCc -3'
miRNA:   3'- gGGUCGCGGG---------------GGCG-----UGGG---------GgCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 77277 0.66 0.392177
Target:  5'- gCCCgAGCuCCgCCGCACCgUCCGCUCg- -3'
miRNA:   3'- -GGG-UCGcGGgGGCGUGG-GGGCGGGgg -5'
21461 5' -69.2 NC_004812.1 + 50387 0.66 0.392177
Target:  5'- cCUCGaCGCCgCCGuCGCCCCCuuccGCCaCCUg -3'
miRNA:   3'- -GGGUcGCGGgGGC-GUGGGGG----CGG-GGG- -5'
21461 5' -69.2 NC_004812.1 + 54887 0.66 0.392177
Target:  5'- aCCCAGgGCCC--GC-CCCCCGgCCa- -3'
miRNA:   3'- -GGGUCgCGGGggCGuGGGGGCgGGgg -5'
21461 5' -69.2 NC_004812.1 + 117299 0.66 0.392177
Target:  5'- aCCAGaUGCUgCaCGUGCuacucgagaaagCCCCGCCCCUg -3'
miRNA:   3'- gGGUC-GCGGgG-GCGUG------------GGGGCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 40271 0.66 0.392177
Target:  5'- uCCCc-C-CCCCCucccuaCACCCCCcCCCCCa -3'
miRNA:   3'- -GGGucGcGGGGGc-----GUGGGGGcGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 120859 0.66 0.392177
Target:  5'- gCC-GCGgCCCCu--CCCCgGCCCCg -3'
miRNA:   3'- gGGuCGCgGGGGcguGGGGgCGGGGg -5'
21461 5' -69.2 NC_004812.1 + 18469 0.66 0.392177
Target:  5'- --gGGCGCggCCCCGCGCCCgCGgggCCCa -3'
miRNA:   3'- gggUCGCG--GGGGCGUGGGgGCgg-GGG- -5'
21461 5' -69.2 NC_004812.1 + 29309 0.66 0.392177
Target:  5'- gCCGGgGCCCgaugcaCGCGCUCCCGUCg-- -3'
miRNA:   3'- gGGUCgCGGGg-----GCGUGGGGGCGGggg -5'
21461 5' -69.2 NC_004812.1 + 151760 0.66 0.392177
Target:  5'- gCC-GCGgCCCCu--CCCCgGCCCCg -3'
miRNA:   3'- gGGuCGCgGGGGcguGGGGgCGGGGg -5'
21461 5' -69.2 NC_004812.1 + 138428 0.66 0.392177
Target:  5'- --gGGgGCUgCCgGCGCCCCauCGCCCUCa -3'
miRNA:   3'- gggUCgCGGgGG-CGUGGGG--GCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 63508 0.66 0.392177
Target:  5'- gCCCgacaccgcgaAGCGCCCgCUGgGCCCgaGCUCCa -3'
miRNA:   3'- -GGG----------UCGCGGG-GGCgUGGGggCGGGGg -5'
21461 5' -69.2 NC_004812.1 + 81159 0.66 0.392177
Target:  5'- aCCGucCGCCUCCGCGgcgaCCCgGCCgCCg -3'
miRNA:   3'- gGGUc-GCGGGGGCGUg---GGGgCGGgGG- -5'
21461 5' -69.2 NC_004812.1 + 121841 0.66 0.392177
Target:  5'- -gCGGCGCagcugauccaCCCCGagGCCCcggggCCGCCCCa -3'
miRNA:   3'- ggGUCGCG----------GGGGCg-UGGG-----GGCGGGGg -5'
21461 5' -69.2 NC_004812.1 + 51296 0.66 0.392177
Target:  5'- uCCCGGCGguuaCCCaa-ACCCaaGCCCCa -3'
miRNA:   3'- -GGGUCGCg---GGGgcgUGGGggCGGGGg -5'
21461 5' -69.2 NC_004812.1 + 146853 0.66 0.392177
Target:  5'- gCCGGCGCgCCgCGgGCCUgguggCgGUCCCCu -3'
miRNA:   3'- gGGUCGCGgGG-GCgUGGG-----GgCGGGGG- -5'
21461 5' -69.2 NC_004812.1 + 46533 0.66 0.392177
Target:  5'- -aCGGgGCCUcuCCGUACuCCCCGUcgggcccgagCCCCg -3'
miRNA:   3'- ggGUCgCGGG--GGCGUG-GGGGCG----------GGGG- -5'
21461 5' -69.2 NC_004812.1 + 105007 0.66 0.392177
Target:  5'- aCCAGCGCgccgacagCCUCGguCuCUCCGgCCUCCg -3'
miRNA:   3'- gGGUCGCG--------GGGGCguG-GGGGC-GGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.