miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21465 3' -54.1 NC_004812.1 + 5334 0.67 0.948431
Target:  5'- cGGGGCGCCGCccggggucgGCGGgggcgcggcgGCGUCGaUGa- -3'
miRNA:   3'- -CCUUGCGGCGa--------CGUCa---------UGCAGC-ACac -5'
21465 3' -54.1 NC_004812.1 + 11310 0.67 0.92945
Target:  5'- cGGGGCGCCGCgggGCGGgg-GcCG-GUGg -3'
miRNA:   3'- -CCUUGCGGCGa--CGUCaugCaGCaCAC- -5'
21465 3' -54.1 NC_004812.1 + 21175 0.7 0.833596
Target:  5'- cGGGACGCCGagGCGc-GCGUCGUGg- -3'
miRNA:   3'- -CCUUGCGGCgaCGUcaUGCAGCACac -5'
21465 3' -54.1 NC_004812.1 + 22147 0.68 0.912693
Target:  5'- cGGAucagGCGCCGCagGCGGUuggcgGCGcCGUGc- -3'
miRNA:   3'- -CCU----UGCGGCGa-CGUCA-----UGCaGCACac -5'
21465 3' -54.1 NC_004812.1 + 24858 0.66 0.952585
Target:  5'- cGGGcgGCGCgGCUGCGGggGCGUCc---- -3'
miRNA:   3'- -CCU--UGCGgCGACGUCa-UGCAGcacac -5'
21465 3' -54.1 NC_004812.1 + 28696 0.66 0.963676
Target:  5'- gGGGcuggccGCGCCGCUGCGGccCGUCu---- -3'
miRNA:   3'- -CCU------UGCGGCGACGUCauGCAGcacac -5'
21465 3' -54.1 NC_004812.1 + 28935 0.72 0.742393
Target:  5'- cGGAAUGCCGCc-CGGggACGUCGUGc- -3'
miRNA:   3'- -CCUUGCGGCGacGUCa-UGCAGCACac -5'
21465 3' -54.1 NC_004812.1 + 36867 0.68 0.900326
Target:  5'- gGGGAgGCCGCggggggGCgAGUACG-CGggGUGg -3'
miRNA:   3'- -CCUUgCGGCGa-----CG-UCAUGCaGCa-CAC- -5'
21465 3' -54.1 NC_004812.1 + 42109 0.69 0.857737
Target:  5'- uGAACGCCGCgaagaagaaGCAGUGgauCGuuccUCGUGUGu -3'
miRNA:   3'- cCUUGCGGCGa--------CGUCAU---GC----AGCACAC- -5'
21465 3' -54.1 NC_004812.1 + 45997 0.7 0.841837
Target:  5'- -cGGCGCCGUUGCGG-GCGgggCGUGg- -3'
miRNA:   3'- ccUUGCGGCGACGUCaUGCa--GCACac -5'
21465 3' -54.1 NC_004812.1 + 48298 0.67 0.948431
Target:  5'- uGGGACGCaCGCgcgUGCGGgcucggGCGUgGUGc- -3'
miRNA:   3'- -CCUUGCG-GCG---ACGUCa-----UGCAgCACac -5'
21465 3' -54.1 NC_004812.1 + 48426 0.7 0.849886
Target:  5'- ---cCGCCGCUGCGGUACGaCGc--- -3'
miRNA:   3'- ccuuGCGGCGACGUCAUGCaGCacac -5'
21465 3' -54.1 NC_004812.1 + 51617 0.71 0.761704
Target:  5'- aGGGGCGCCGCgGCGGcccGCGgccgCGUGc- -3'
miRNA:   3'- -CCUUGCGGCGaCGUCa--UGCa---GCACac -5'
21465 3' -54.1 NC_004812.1 + 53591 0.71 0.789779
Target:  5'- aGGGCGUacuCGgUGCGGUugGUCGUGa- -3'
miRNA:   3'- cCUUGCG---GCgACGUCAugCAGCACac -5'
21465 3' -54.1 NC_004812.1 + 54207 0.66 0.966932
Target:  5'- -aGACGCCGCccGCGGgcgcuucCGUCGUGc- -3'
miRNA:   3'- ccUUGCGGCGa-CGUCau-----GCAGCACac -5'
21465 3' -54.1 NC_004812.1 + 55861 0.74 0.641491
Target:  5'- -aGGCGCCGCaGCAGggGCGUCGUcagGUGu -3'
miRNA:   3'- ccUUGCGGCGaCGUCa-UGCAGCA---CAC- -5'
21465 3' -54.1 NC_004812.1 + 56113 0.71 0.789779
Target:  5'- --cACGCCGCUGCGGUACGcCu---- -3'
miRNA:   3'- ccuUGCGGCGACGUCAUGCaGcacac -5'
21465 3' -54.1 NC_004812.1 + 57922 0.66 0.952585
Target:  5'- aGGAGCGCCaGCcaguccucaaucUGCAGcUGCGgCGUGc- -3'
miRNA:   3'- -CCUUGCGG-CG------------ACGUC-AUGCaGCACac -5'
21465 3' -54.1 NC_004812.1 + 58441 0.67 0.934554
Target:  5'- cGGAGcCGCCGgUGCuGU-CGUCGcccaccucgcUGUGg -3'
miRNA:   3'- -CCUU-GCGGCgACGuCAuGCAGC----------ACAC- -5'
21465 3' -54.1 NC_004812.1 + 58444 0.76 0.510058
Target:  5'- aGGAuCGCCGUgaggguguuaaUGUAGUACGUCGaGUGg -3'
miRNA:   3'- -CCUuGCGGCG-----------ACGUCAUGCAGCaCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.