miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21465 5' -59.5 NC_004812.1 + 133564 0.66 0.744628
Target:  5'- -gCGgCGuCGAGCUCGGcGGCGUccUGCc -3'
miRNA:   3'- caGUgGCuGUUCGAGCC-CCGCG--ACGa -5'
21465 5' -59.5 NC_004812.1 + 121147 0.66 0.744628
Target:  5'- -gCGCCGAC--GC-CGcGGCGCUGCa -3'
miRNA:   3'- caGUGGCUGuuCGaGCcCCGCGACGa -5'
21465 5' -59.5 NC_004812.1 + 111718 0.66 0.744628
Target:  5'- -cCACgGGCGAGCUCGcguucGGGUGCgacGCc -3'
miRNA:   3'- caGUGgCUGUUCGAGC-----CCCGCGa--CGa -5'
21465 5' -59.5 NC_004812.1 + 47765 0.66 0.744628
Target:  5'- -gCGCCG-CGGcGCUgGGGGCGUcgGCUc -3'
miRNA:   3'- caGUGGCuGUU-CGAgCCCCGCGa-CGA- -5'
21465 5' -59.5 NC_004812.1 + 133242 0.66 0.744628
Target:  5'- --gACgGACAcggcGGC-CGGGGCGgUGCa -3'
miRNA:   3'- cagUGgCUGU----UCGaGCCCCGCgACGa -5'
21465 5' -59.5 NC_004812.1 + 35830 0.66 0.743674
Target:  5'- cGUCGCCGucgcgguacuugcGCAgcAGCgCGGGGuCGCUgGCg -3'
miRNA:   3'- -CAGUGGC-------------UGU--UCGaGCCCC-GCGA-CGa -5'
21465 5' -59.5 NC_004812.1 + 155913 0.66 0.743674
Target:  5'- -aCGCCGACgGAGCUccggaccCGGGGaCGC-GCUc -3'
miRNA:   3'- caGUGGCUG-UUCGA-------GCCCC-GCGaCGA- -5'
21465 5' -59.5 NC_004812.1 + 125012 0.66 0.743674
Target:  5'- -aCGCCGACgGAGCUccggaccCGGGGaCGC-GCUc -3'
miRNA:   3'- caGUGGCUG-UUCGA-------GCCCC-GCGaCGA- -5'
21465 5' -59.5 NC_004812.1 + 36707 0.66 0.735043
Target:  5'- -gCugCGG--GGCUgCGGGGCGCgGCg -3'
miRNA:   3'- caGugGCUguUCGA-GCCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 7935 0.66 0.735043
Target:  5'- -gCGCCGGCGcGGC-CGGGGgGC-GCg -3'
miRNA:   3'- caGUGGCUGU-UCGaGCCCCgCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 22254 0.66 0.735043
Target:  5'- -cCACCGcucguucCGGGCcCGGGGCGC-GCg -3'
miRNA:   3'- caGUGGCu------GUUCGaGCCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 87064 0.66 0.735043
Target:  5'- -gCGCCG-CGGGCa-GGGGCGCggggggGCg -3'
miRNA:   3'- caGUGGCuGUUCGagCCCCGCGa-----CGa -5'
21465 5' -59.5 NC_004812.1 + 38836 0.66 0.735043
Target:  5'- -gCGCCGGCGcGGC-CGGGGgGC-GCg -3'
miRNA:   3'- caGUGGCUGU-UCGaGCCCCgCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 5806 0.66 0.735043
Target:  5'- -gCugCGG--GGCUgCGGGGCGCgGCg -3'
miRNA:   3'- caGugGCUguUCGA-GCCCCGCGaCGa -5'
21465 5' -59.5 NC_004812.1 + 145720 0.66 0.73408
Target:  5'- -gCGCUGACGgacgcccgaacgcGGCgaccCGGGGCGCgcggGCg -3'
miRNA:   3'- caGUGGCUGU-------------UCGa---GCCCCGCGa---CGa -5'
21465 5' -59.5 NC_004812.1 + 134127 0.66 0.73408
Target:  5'- -gCGCCGAUggGgUCGGGGaagacuacggcccUGUUGCg -3'
miRNA:   3'- caGUGGCUGuuCgAGCCCC-------------GCGACGa -5'
21465 5' -59.5 NC_004812.1 + 154748 0.66 0.725372
Target:  5'- gGUCGCgGAgGAGCgggcCGGGGCuGC-GCg -3'
miRNA:   3'- -CAGUGgCUgUUCGa---GCCCCG-CGaCGa -5'
21465 5' -59.5 NC_004812.1 + 29240 0.66 0.725372
Target:  5'- gGUCGCgGAgGAGCgggcCGGGGCuGC-GCg -3'
miRNA:   3'- -CAGUGgCUgUUCGa---GCCCCG-CGaCGa -5'
21465 5' -59.5 NC_004812.1 + 72851 0.66 0.725372
Target:  5'- -cCGCCGGCGaucAGCgcggacagCGcGGGCaGCUGCg -3'
miRNA:   3'- caGUGGCUGU---UCGa-------GC-CCCG-CGACGa -5'
21465 5' -59.5 NC_004812.1 + 35911 0.66 0.7244
Target:  5'- gGUCcUCGACGAGCUCGcgcucccGGGCgGCcGCUu -3'
miRNA:   3'- -CAGuGGCUGUUCGAGC-------CCCG-CGaCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.