miRNA display CGI


Results 1 - 20 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21466 3' -65.3 NC_004812.1 + 8071 0.66 0.552886
Target:  5'- cCCGCGACCCcgccGcGCCC----GGCGGCc -3'
miRNA:   3'- -GGCGCUGGGa---C-CGGGaccuCCGCCGc -5'
21466 3' -65.3 NC_004812.1 + 47175 0.66 0.552886
Target:  5'- gCCGCGcgggucACCUuaauaugcgaggUGGaCCUGGGGGCgcGGCGc -3'
miRNA:   3'- -GGCGC------UGGG------------ACCgGGACCUCCG--CCGC- -5'
21466 3' -65.3 NC_004812.1 + 87841 0.66 0.552886
Target:  5'- gCGUGACCgUGuaCCUGGAGcccUGGCa -3'
miRNA:   3'- gGCGCUGGgACcgGGACCUCc--GCCGc -5'
21466 3' -65.3 NC_004812.1 + 78649 0.66 0.552886
Target:  5'- aCGgGGCCggGGCCCccucuggguUGGGGGuCGGgGg -3'
miRNA:   3'- gGCgCUGGgaCCGGG---------ACCUCC-GCCgC- -5'
21466 3' -65.3 NC_004812.1 + 59918 0.66 0.552886
Target:  5'- cCCGCGGCgaugCC-GGCCCacucGAGcGCGGUGg -3'
miRNA:   3'- -GGCGCUG----GGaCCGGGac--CUC-CGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 118093 0.66 0.552886
Target:  5'- aCCGCGugCuccggCUGuCCCUGGAG-CaGGCGa -3'
miRNA:   3'- -GGCGCugG-----GACcGGGACCUCcG-CCGC- -5'
21466 3' -65.3 NC_004812.1 + 40059 0.66 0.552886
Target:  5'- gCCGCGGCCgCUcGuGCgCUuuuccgggcGGcGGGCGGCGg -3'
miRNA:   3'- -GGCGCUGG-GA-C-CGgGA---------CC-UCCGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 13319 0.66 0.552886
Target:  5'- gCCGCG-CCggGGgUCgGGGGuGCGGCGg -3'
miRNA:   3'- -GGCGCuGGgaCCgGGaCCUC-CGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 91104 0.66 0.552886
Target:  5'- cUCGcCGGCCUgccGGCCguggggucgcUUGGGGGCGGgGc -3'
miRNA:   3'- -GGC-GCUGGGa--CCGG----------GACCUCCGCCgC- -5'
21466 3' -65.3 NC_004812.1 + 38972 0.66 0.552886
Target:  5'- cCCGCGACCCcgccGcGCCC----GGCGGCc -3'
miRNA:   3'- -GGCGCUGGGa---C-CGGGaccuCCGCCGc -5'
21466 3' -65.3 NC_004812.1 + 49413 0.66 0.552886
Target:  5'- cCCGCG-CCgUGGCCCcgGGccGCcGCGu -3'
miRNA:   3'- -GGCGCuGGgACCGGGa-CCucCGcCGC- -5'
21466 3' -65.3 NC_004812.1 + 106824 0.66 0.552886
Target:  5'- cCCGCGggaggGCCCgcggGGCCCuuUGuGGGUGuGCGu -3'
miRNA:   3'- -GGCGC-----UGGGa---CCGGG--ACcUCCGC-CGC- -5'
21466 3' -65.3 NC_004812.1 + 87827 0.66 0.552886
Target:  5'- cCUGCGGCCCacgGGCgugaccguguaCCUGGAGcccUGGCa -3'
miRNA:   3'- -GGCGCUGGGa--CCG-----------GGACCUCc--GCCGc -5'
21466 3' -65.3 NC_004812.1 + 142781 0.66 0.552886
Target:  5'- cCCGCuGCCCgcgcgcGGUCCucgUGGAGGagaugaCGGCGu -3'
miRNA:   3'- -GGCGcUGGGa-----CCGGG---ACCUCC------GCCGC- -5'
21466 3' -65.3 NC_004812.1 + 29714 0.66 0.551955
Target:  5'- gCCGCGaagagcggGCCUUGGUgcgcgagggcgggCCgagggGGGGcGCGGCGg -3'
miRNA:   3'- -GGCGC--------UGGGACCG-------------GGa----CCUC-CGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 155222 0.66 0.551955
Target:  5'- gCCGCGaagagcggGCCUUGGUgcgcgagggcgggCCgagggGGGGcGCGGCGg -3'
miRNA:   3'- -GGCGC--------UGGGACCG-------------GGa----CCUC-CGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 104143 0.66 0.54359
Target:  5'- gCCGCGugCCgguaGGCggcaGGAGGCGacGCGg -3'
miRNA:   3'- -GGCGCugGGa---CCGgga-CCUCCGC--CGC- -5'
21466 3' -65.3 NC_004812.1 + 4875 0.66 0.54359
Target:  5'- -aGCGGCCCgUGGCgucgcgCCcGGccacGGCGGCGc -3'
miRNA:   3'- ggCGCUGGG-ACCG------GGaCCu---CCGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 79376 0.66 0.54359
Target:  5'- uUCGaGGCCCUcgacgcGGCCCUGc--GCGGCGa -3'
miRNA:   3'- -GGCgCUGGGA------CCGGGACcucCGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 75922 0.66 0.54359
Target:  5'- gCCG-GACCCccccagGGaCCUGGAGGU-GCGg -3'
miRNA:   3'- -GGCgCUGGGa-----CCgGGACCUCCGcCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.