miRNA display CGI


Results 1 - 20 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21466 3' -65.3 NC_004812.1 + 1 0.66 0.525157
Target:  5'- ----GACCCgGGCCCUcccccGGCGGCGc -3'
miRNA:   3'- ggcgCUGGGaCCGGGAccu--CCGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 690 0.69 0.3438
Target:  5'- cCCGCGGCCC-GGCCUccucGGc-GCGGCa -3'
miRNA:   3'- -GGCGCUGGGaCCGGGa---CCucCGCCGc -5'
21466 3' -65.3 NC_004812.1 + 810 0.73 0.21204
Target:  5'- gCCGCcGCCCggccgggGGUCCUGGGGGUccggGGUGg -3'
miRNA:   3'- -GGCGcUGGGa------CCGGGACCUCCG----CCGC- -5'
21466 3' -65.3 NC_004812.1 + 942 0.69 0.365759
Target:  5'- gCCGCGcgcuCCC-GGCUgUGGAGGCcuaggggagcccGGCGu -3'
miRNA:   3'- -GGCGCu---GGGaCCGGgACCUCCG------------CCGC- -5'
21466 3' -65.3 NC_004812.1 + 1218 0.66 0.516029
Target:  5'- gCC-CGGCCC-GGCCCccggGGuuccuGGCGGaCGg -3'
miRNA:   3'- -GGcGCUGGGaCCGGGa---CCu----CCGCC-GC- -5'
21466 3' -65.3 NC_004812.1 + 1256 0.68 0.420637
Target:  5'- gCCGCGGCCgcccgUUGGUCCgccGGccgcGGGCgGGCGg -3'
miRNA:   3'- -GGCGCUGG-----GACCGGGa--CC----UCCG-CCGC- -5'
21466 3' -65.3 NC_004812.1 + 1281 0.68 0.428874
Target:  5'- uUC-CGGCCCccagGGuCCCcGGAGGCGGgGc -3'
miRNA:   3'- -GGcGCUGGGa---CC-GGGaCCUCCGCCgC- -5'
21466 3' -65.3 NC_004812.1 + 1405 0.73 0.21204
Target:  5'- uUCGCGGCCC-GGCCCc-GAcGGCGGCc -3'
miRNA:   3'- -GGCGCUGGGaCCGGGacCU-CCGCCGc -5'
21466 3' -65.3 NC_004812.1 + 1466 0.68 0.388667
Target:  5'- gCgGCGACgCCgGcGUCCUcGGcGGGCGGCGg -3'
miRNA:   3'- -GgCGCUG-GGaC-CGGGA-CC-UCCGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 1672 0.68 0.404453
Target:  5'- gCCGCGGCgCCgcGGCCCgccc-GCGGCGg -3'
miRNA:   3'- -GGCGCUG-GGa-CCGGGaccucCGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 2023 0.69 0.365759
Target:  5'- gCGcCGACgCCggcgGGCCUcGGucGGCGGCGg -3'
miRNA:   3'- gGC-GCUG-GGa---CCGGGaCCu-CCGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 2216 0.67 0.471433
Target:  5'- gCCcCGGCCC-GGCCCgccgccGAGGUGGgGg -3'
miRNA:   3'- -GGcGCUGGGaCCGGGac----CUCCGCCgC- -5'
21466 3' -65.3 NC_004812.1 + 2220 0.74 0.16801
Target:  5'- gCCGCGGCCCgcGGCCCagcgcacgcgcGGcgcGGCGGCGg -3'
miRNA:   3'- -GGCGCUGGGa-CCGGGa----------CCu--CCGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 2463 0.68 0.412496
Target:  5'- gCCGCGGCggaaguCCggGGCgCC-GGcGGCGGCGg -3'
miRNA:   3'- -GGCGCUG------GGa-CCG-GGaCCuCCGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 2628 0.76 0.123094
Target:  5'- gCCGCGGCCCaGGCgC-GGcGGCGGCGc -3'
miRNA:   3'- -GGCGCUGGGaCCGgGaCCuCCGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 3017 0.68 0.428874
Target:  5'- -gGCGGCCgugucgGGCCCgcaGAGGCGGUu -3'
miRNA:   3'- ggCGCUGGga----CCGGGac-CUCCGCCGc -5'
21466 3' -65.3 NC_004812.1 + 3204 0.67 0.445631
Target:  5'- gCGCGGCgCagcgGGCCCgaGGcGcGCGGCGg -3'
miRNA:   3'- gGCGCUGgGa---CCGGGa-CCuC-CGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 3494 0.69 0.351013
Target:  5'- cCCGCG-CCC--GCCCccGGGGCGGCGc -3'
miRNA:   3'- -GGCGCuGGGacCGGGacCUCCGCCGC- -5'
21466 3' -65.3 NC_004812.1 + 3513 0.73 0.197877
Target:  5'- cCCGgGGCCggcGGCCCcGGGGGCGGgGc -3'
miRNA:   3'- -GGCgCUGGga-CCGGGaCCUCCGCCgC- -5'
21466 3' -65.3 NC_004812.1 + 3540 0.71 0.256377
Target:  5'- gCCGCGGCgCCgggccGGCUCUucuugcgcgccggcgGGcAGGCGGCGg -3'
miRNA:   3'- -GGCGCUG-GGa----CCGGGA---------------CC-UCCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.