miRNA display CGI


Results 1 - 20 of 461 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21466 5' -57.6 NC_004812.1 + 122209 0.66 0.873484
Target:  5'- gUCUggGCGCcgCCCCGGGGGCgGGCGCgGg -3'
miRNA:   3'- -GGGa-UGUG--GGGGCUCUUGgUCGUGgU- -5'
21466 5' -57.6 NC_004812.1 + 88020 0.66 0.873484
Target:  5'- aCCCUGuucaCCCgGAGGGCCGGC-CUg -3'
miRNA:   3'- -GGGAUgug-GGGgCUCUUGGUCGuGGu -5'
21466 5' -57.6 NC_004812.1 + 153286 0.66 0.873484
Target:  5'- aCCCgcuCuuCCCCGAG-GCCuggcGCGCCGc -3'
miRNA:   3'- -GGGau-GugGGGGCUCuUGGu---CGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 130571 0.66 0.873484
Target:  5'- gCC-GCGCCCCCGGcc-CCGGCcCCGc -3'
miRNA:   3'- gGGaUGUGGGGGCUcuuGGUCGuGGU- -5'
21466 5' -57.6 NC_004812.1 + 119325 0.66 0.873484
Target:  5'- gCCCUG-ACCCCCG-GAACgCuGC-CCGc -3'
miRNA:   3'- -GGGAUgUGGGGGCuCUUG-GuCGuGGU- -5'
21466 5' -57.6 NC_004812.1 + 143586 0.66 0.873484
Target:  5'- gCCCcGCgACCCCCGGcGAUCAGgcCGCCu -3'
miRNA:   3'- -GGGaUG-UGGGGGCUcUUGGUC--GUGGu -5'
21466 5' -57.6 NC_004812.1 + 530 0.66 0.873484
Target:  5'- uCCCg----CCCCGGGAGCCGgaaggcggcgacGCGCCGc -3'
miRNA:   3'- -GGGaugugGGGGCUCUUGGU------------CGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 126038 0.66 0.873484
Target:  5'- uCCCg----CCCCGGGAGCCGgaaggcggcgacGCGCCGc -3'
miRNA:   3'- -GGGaugugGGGGCUCUUGGU------------CGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 5062 0.66 0.873484
Target:  5'- gCC-GCGCCCCCGGcc-CCGGCcCCGc -3'
miRNA:   3'- gGGaUGUGGGGGCUcuuGGUCGuGGU- -5'
21466 5' -57.6 NC_004812.1 + 62093 0.66 0.873484
Target:  5'- cCCCgagguCCCCCGuccaccAGAACCGcGCGCUg -3'
miRNA:   3'- -GGGaugu-GGGGGC------UCUUGGU-CGUGGu -5'
21466 5' -57.6 NC_004812.1 + 118035 0.66 0.873484
Target:  5'- gCCCgccCACCCCCGcuc-CCGGC-CCGc -3'
miRNA:   3'- -GGGau-GUGGGGGCucuuGGUCGuGGU- -5'
21466 5' -57.6 NC_004812.1 + 63290 0.66 0.873484
Target:  5'- gCCC--CGCCCaCCuGGAGCCgcuugAGCACCGc -3'
miRNA:   3'- -GGGauGUGGG-GGcUCUUGG-----UCGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 75175 0.66 0.873484
Target:  5'- gCCUGgGgCCCUGGGccCCGGaCGCCAu -3'
miRNA:   3'- gGGAUgUgGGGGCUCuuGGUC-GUGGU- -5'
21466 5' -57.6 NC_004812.1 + 153110 0.66 0.873484
Target:  5'- gUCUggGCGCcgCCCCGGGGGCgGGCGCgGg -3'
miRNA:   3'- -GGGa-UGUG--GGGGCUCUUGgUCGUGgU- -5'
21466 5' -57.6 NC_004812.1 + 45647 0.66 0.873484
Target:  5'- gCCCgcgGCGauagcgaguCCCgCGAGGAuCCAGCACaCGg -3'
miRNA:   3'- -GGGa--UGU---------GGGgGCUCUU-GGUCGUG-GU- -5'
21466 5' -57.6 NC_004812.1 + 16214 0.66 0.873484
Target:  5'- aCCCgggccGCGCgCCgGAGGcggaGCCGGCcgGCCAg -3'
miRNA:   3'- -GGGa----UGUGgGGgCUCU----UGGUCG--UGGU- -5'
21466 5' -57.6 NC_004812.1 + 150226 0.66 0.873484
Target:  5'- gCCCUG-ACCCCCG-GAACgCuGC-CCGc -3'
miRNA:   3'- -GGGAUgUGGGGGCuCUUG-GuCGuGGU- -5'
21466 5' -57.6 NC_004812.1 + 153675 0.66 0.873484
Target:  5'- cUCCUGCuCUCCaCGcGGAccuggccuucGCCGGCGCCGu -3'
miRNA:   3'- -GGGAUGuGGGG-GC-UCU----------UGGUCGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 148936 0.66 0.873484
Target:  5'- gCCCgccCACCCCCGcuc-CCGGC-CCGc -3'
miRNA:   3'- -GGGau-GUGGGGGCucuuGGUCGuGGU- -5'
21466 5' -57.6 NC_004812.1 + 97837 0.66 0.873484
Target:  5'- gCCCaccGCGCCCUCGcucGCCGgGCGCCGc -3'
miRNA:   3'- -GGGa--UGUGGGGGCucuUGGU-CGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.