miRNA display CGI


Results 1 - 20 of 461 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21466 5' -57.6 NC_004812.1 + 129 0.68 0.774416
Target:  5'- gCCCgggaGC-CCgCCCGGGAGCCcGC-CCAa -3'
miRNA:   3'- -GGGa---UGuGG-GGGCUCUUGGuCGuGGU- -5'
21466 5' -57.6 NC_004812.1 + 299 0.68 0.755811
Target:  5'- gUCCggcCGCgCCCGAGAgcgcgggcaACCAGCACg- -3'
miRNA:   3'- -GGGau-GUGgGGGCUCU---------UGGUCGUGgu -5'
21466 5' -57.6 NC_004812.1 + 530 0.66 0.873484
Target:  5'- uCCCg----CCCCGGGAGCCGgaaggcggcgacGCGCCGc -3'
miRNA:   3'- -GGGaugugGGGGCUCUUGGU------------CGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 1020 0.67 0.818632
Target:  5'- gCC-GCGCCCCCgcGAGGGcCCGGcCGCCc -3'
miRNA:   3'- gGGaUGUGGGGG--CUCUU-GGUC-GUGGu -5'
21466 5' -57.6 NC_004812.1 + 1657 0.66 0.851112
Target:  5'- gCC-GCuCCCCCGuuGGCCgcGGCGCCGc -3'
miRNA:   3'- gGGaUGuGGGGGCucUUGG--UCGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 1735 0.68 0.755811
Target:  5'- cCCCgcGCGCCUCCGcggcccGAGCCcGCGCCc -3'
miRNA:   3'- -GGGa-UGUGGGGGCu-----CUUGGuCGUGGu -5'
21466 5' -57.6 NC_004812.1 + 2630 0.71 0.587563
Target:  5'- gCCC--CGCCCCgCGAG-ACCuGCGCCGu -3'
miRNA:   3'- -GGGauGUGGGG-GCUCuUGGuCGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 2846 0.66 0.858769
Target:  5'- cCCCgcacgcgGCGCgaCgCCGAGGacgccgugcgcGCCGGCACCGc -3'
miRNA:   3'- -GGGa------UGUGg-G-GGCUCU-----------UGGUCGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 2964 0.67 0.801381
Target:  5'- gCCCUgcGCGCCCagcgCCGAGAcgucgggcgGCCGGU-CCAg -3'
miRNA:   3'- -GGGA--UGUGGG----GGCUCU---------UGGUCGuGGU- -5'
21466 5' -57.6 NC_004812.1 + 3240 0.67 0.810085
Target:  5'- aCCCgGCGCCCgCCaGGGGcGCCcGCGCCc -3'
miRNA:   3'- -GGGaUGUGGG-GG-CUCU-UGGuCGUGGu -5'
21466 5' -57.6 NC_004812.1 + 3360 0.71 0.577591
Target:  5'- cCCCgGCcCCCgCCGGGAACCccGCGCCc -3'
miRNA:   3'- -GGGaUGuGGG-GGCUCUUGGu-CGUGGu -5'
21466 5' -57.6 NC_004812.1 + 3409 0.67 0.801381
Target:  5'- gCCCgccuC-CCCCCGGcGGcccuCCGGCGCCGc -3'
miRNA:   3'- -GGGau--GuGGGGGCU-CUu---GGUCGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 3493 0.72 0.547925
Target:  5'- cCCCgcgccCGCCCCCGGGG--CGGCGCCc -3'
miRNA:   3'- -GGGau---GUGGGGGCUCUugGUCGUGGu -5'
21466 5' -57.6 NC_004812.1 + 3512 0.71 0.586565
Target:  5'- gCCCggggccgGCGgCCCCGGGGGCggggccgCGGCGCCGg -3'
miRNA:   3'- -GGGa------UGUgGGGGCUCUUG-------GUCGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 3896 0.68 0.746346
Target:  5'- gCCUcCGCCUCCGAGGccGCCccCGCCAc -3'
miRNA:   3'- gGGAuGUGGGGGCUCU--UGGucGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 3940 0.71 0.607594
Target:  5'- gCCCUcGCugCCCCcgccucccgGAGGcCCGGCGCCc -3'
miRNA:   3'- -GGGA-UGugGGGG---------CUCUuGGUCGUGGu -5'
21466 5' -57.6 NC_004812.1 + 3978 0.69 0.707606
Target:  5'- gCCagguCGCCgCCGAGcccucGGCCAGCGCCu -3'
miRNA:   3'- gGGau--GUGGgGGCUC-----UUGGUCGUGGu -5'
21466 5' -57.6 NC_004812.1 + 4089 0.69 0.687831
Target:  5'- cCCCcGCGgCCCCGgcGGGGCCguccuccccGGCGCCGg -3'
miRNA:   3'- -GGGaUGUgGGGGC--UCUUGG---------UCGUGGU- -5'
21466 5' -57.6 NC_004812.1 + 4195 0.68 0.76517
Target:  5'- gCCgaggGCGCCCCCGcGGcgcCCGGCcCCAc -3'
miRNA:   3'- gGGa---UGUGGGGGCuCUu--GGUCGuGGU- -5'
21466 5' -57.6 NC_004812.1 + 4574 0.67 0.818632
Target:  5'- aCCCUugGaCCCCCGGGcccGCCGaccCGCCc -3'
miRNA:   3'- -GGGAugU-GGGGGCUCu--UGGUc--GUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.