miRNA display CGI


Results 1 - 20 of 301 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21468 3' -51.1 NC_004812.1 + 83639 0.65 0.996826
Target:  5'- gGGgcgCCGACGcCGcccugcgagaggucGUGUCGUCCGAcguggagacguggGCCa -3'
miRNA:   3'- -CCa--GGUUGUuGU--------------CGCAGCAGGCU-------------UGG- -5'
21468 3' -51.1 NC_004812.1 + 112973 0.66 0.996505
Target:  5'- cGUCCGGCGgcgauggaucGCGGCGccgCGgccgCCGAGgCa -3'
miRNA:   3'- cCAGGUUGU----------UGUCGCa--GCa---GGCUUgG- -5'
21468 3' -51.1 NC_004812.1 + 3088 0.66 0.996505
Target:  5'- cGGUCCAggcgggcgggGCGGgggaGGCGcCG-CCGAGCUc -3'
miRNA:   3'- -CCAGGU----------UGUUg---UCGCaGCaGGCUUGG- -5'
21468 3' -51.1 NC_004812.1 + 121203 0.66 0.996505
Target:  5'- -aUCCGGCGGCAGCuggCGcuggCCGAcgugGCCc -3'
miRNA:   3'- ccAGGUUGUUGUCGca-GCa---GGCU----UGG- -5'
21468 3' -51.1 NC_004812.1 + 74147 0.66 0.996505
Target:  5'- cGUacuGCAGCGGCGUucCGUCCGGGg- -3'
miRNA:   3'- cCAgguUGUUGUCGCA--GCAGGCUUgg -5'
21468 3' -51.1 NC_004812.1 + 27826 0.66 0.996505
Target:  5'- gGGUUCGACgGGCGGCucaGUCGccauugcgagaaUCCGAcCCg -3'
miRNA:   3'- -CCAGGUUG-UUGUCG---CAGC------------AGGCUuGG- -5'
21468 3' -51.1 NC_004812.1 + 60214 0.66 0.996505
Target:  5'- -cUCgAGCGcgagcGCGGCGUCG-CCG-GCCa -3'
miRNA:   3'- ccAGgUUGU-----UGUCGCAGCaGGCuUGG- -5'
21468 3' -51.1 NC_004812.1 + 122915 0.66 0.996505
Target:  5'- cGG-CCGACGGCcGCGaCG-CCGGugCc -3'
miRNA:   3'- -CCaGGUUGUUGuCGCaGCaGGCUugG- -5'
21468 3' -51.1 NC_004812.1 + 45969 0.66 0.996505
Target:  5'- uGUgCAGCAcgcGCAGCucccccgCGUCCGGcGCCg -3'
miRNA:   3'- cCAgGUUGU---UGUCGca-----GCAGGCU-UGG- -5'
21468 3' -51.1 NC_004812.1 + 147060 0.66 0.996505
Target:  5'- -uUCCAAauaccCGGCGUucgucCGUCCGGACa -3'
miRNA:   3'- ccAGGUUguu--GUCGCA-----GCAGGCUUGg -5'
21468 3' -51.1 NC_004812.1 + 128597 0.66 0.996505
Target:  5'- cGGUCCAggcgggcgggGCGGgggaGGCGcCG-CCGAGCUc -3'
miRNA:   3'- -CCAGGU----------UGUUg---UCGCaGCaGGCUUGG- -5'
21468 3' -51.1 NC_004812.1 + 32039 0.66 0.996334
Target:  5'- gGGcUCCAggcccgcgaugaccGCcuCGGCGUCGUCgCgGGGCCc -3'
miRNA:   3'- -CC-AGGU--------------UGuuGUCGCAGCAG-G-CUUGG- -5'
21468 3' -51.1 NC_004812.1 + 17884 0.66 0.996157
Target:  5'- cGG-CCGGCAcgccgcgggcccgccGCGcccGCgGUCGUCCGGGCg -3'
miRNA:   3'- -CCaGGUUGU---------------UGU---CG-CAGCAGGCUUGg -5'
21468 3' -51.1 NC_004812.1 + 88405 0.66 0.99591
Target:  5'- cGG-CCGGCcGCGcGCGgccgggCGUCCGGcgcGCCc -3'
miRNA:   3'- -CCaGGUUGuUGU-CGCa-----GCAGGCU---UGG- -5'
21468 3' -51.1 NC_004812.1 + 58709 0.66 0.99591
Target:  5'- cGUUgGGgAACAGCGUCGcgUgGAACUg -3'
miRNA:   3'- cCAGgUUgUUGUCGCAGCa-GgCUUGG- -5'
21468 3' -51.1 NC_004812.1 + 58076 0.66 0.99591
Target:  5'- cGGcgCCcuGCGACGGCucGUCGcCgGGGCCg -3'
miRNA:   3'- -CCa-GGu-UGUUGUCG--CAGCaGgCUUGG- -5'
21468 3' -51.1 NC_004812.1 + 110368 0.66 0.99591
Target:  5'- -aUCCAACAgGCGGUGcUG-CUGGACCg -3'
miRNA:   3'- ccAGGUUGU-UGUCGCaGCaGGCUUGG- -5'
21468 3' -51.1 NC_004812.1 + 140480 0.66 0.99591
Target:  5'- cGGUCgcGCAGCuGCGUCG-CCaGGuCCg -3'
miRNA:   3'- -CCAGguUGUUGuCGCAGCaGG-CUuGG- -5'
21468 3' -51.1 NC_004812.1 + 121243 0.66 0.99591
Target:  5'- aGG-CCGugGGCGGgGUCG-CCGGGgUa -3'
miRNA:   3'- -CCaGGUugUUGUCgCAGCaGGCUUgG- -5'
21468 3' -51.1 NC_004812.1 + 141086 0.66 0.99591
Target:  5'- cGGUUCGcucgagaGGCGGCGUCGUCUccuCCc -3'
miRNA:   3'- -CCAGGUug-----UUGUCGCAGCAGGcuuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.