miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21468 5' -54.2 NC_004812.1 + 127984 0.66 0.966932
Target:  5'- uCCGGggcgCCGGCGGCGGCGgccucgCGggCGGg -3'
miRNA:   3'- -GGCCa---GGUUGUUGUCGCa-----GCagGCUu -5'
21468 5' -54.2 NC_004812.1 + 17774 0.66 0.966932
Target:  5'- -gGGUCCugcggggacacGCAGCGGCGUCccUCCGGc -3'
miRNA:   3'- ggCCAGGu----------UGUUGUCGCAGc-AGGCUu -5'
21468 5' -54.2 NC_004812.1 + 2476 0.66 0.966932
Target:  5'- uCCGGggcgCCGGCGGCGGCGgccucgCGggCGGg -3'
miRNA:   3'- -GGCCa---GGUUGUUGUCGCa-----GCagGCUu -5'
21468 5' -54.2 NC_004812.1 + 58643 0.66 0.966932
Target:  5'- aCUGGUUgcGCuGCAGCGcCGUCCaGAAc -3'
miRNA:   3'- -GGCCAGguUGuUGUCGCaGCAGG-CUU- -5'
21468 5' -54.2 NC_004812.1 + 32034 0.66 0.965977
Target:  5'- cCCGGgggcUCCAggcccgcgaugaccGCcuCGGCGUCGUCgCGGGg -3'
miRNA:   3'- -GGCC----AGGU--------------UGuuGUCGCAGCAG-GCUU- -5'
21468 5' -54.2 NC_004812.1 + 67810 0.66 0.963676
Target:  5'- gCgGGcCCGGCAGCccccCGUCcGUCCGAAa -3'
miRNA:   3'- -GgCCaGGUUGUUGuc--GCAG-CAGGCUU- -5'
21468 5' -54.2 NC_004812.1 + 120184 0.66 0.963676
Target:  5'- gCGGUCUuccuacGCAACGcCGUCGUCgCGGg -3'
miRNA:   3'- gGCCAGGu-----UGUUGUcGCAGCAG-GCUu -5'
21468 5' -54.2 NC_004812.1 + 73843 0.66 0.960203
Target:  5'- gCGGcacCCGACucgcgcguCAGCGUCGUCgCGGu -3'
miRNA:   3'- gGCCa--GGUUGuu------GUCGCAGCAG-GCUu -5'
21468 5' -54.2 NC_004812.1 + 69870 0.66 0.960203
Target:  5'- gUCGGcCCGGCGcuggucGCcGuCGUCGUCCGGc -3'
miRNA:   3'- -GGCCaGGUUGU------UGuC-GCAGCAGGCUu -5'
21468 5' -54.2 NC_004812.1 + 154051 0.66 0.960203
Target:  5'- -gGGUCgucgucgacgaCGGCGGCGGCGUCGUCg--- -3'
miRNA:   3'- ggCCAG-----------GUUGUUGUCGCAGCAGgcuu -5'
21468 5' -54.2 NC_004812.1 + 106724 0.66 0.960203
Target:  5'- cUCGGggUCGGCGGCGGgGcccaUCGUCCGGg -3'
miRNA:   3'- -GGCCa-GGUUGUUGUCgC----AGCAGGCUu -5'
21468 5' -54.2 NC_004812.1 + 123150 0.66 0.960203
Target:  5'- -gGGUCgucgucgacgaCGGCGGCGGCGUCGUCg--- -3'
miRNA:   3'- ggCCAG-----------GUUGUUGUCGCAGCAGgcuu -5'
21468 5' -54.2 NC_004812.1 + 17882 0.66 0.958013
Target:  5'- aCCGG-CCGGCAcgccgcgggcccgccGCGcccGCgGUCGUCCGGg -3'
miRNA:   3'- -GGCCaGGUUGU---------------UGU---CG-CAGCAGGCUu -5'
21468 5' -54.2 NC_004812.1 + 2385 0.66 0.958013
Target:  5'- gCGGUCCAGCGccagguagacgggccGCAGCGgcgCGgCCa-- -3'
miRNA:   3'- gGCCAGGUUGU---------------UGUCGCa--GCaGGcuu -5'
21468 5' -54.2 NC_004812.1 + 127893 0.66 0.958013
Target:  5'- gCGGUCCAGCGccagguagacgggccGCAGCGgcgCGgCCa-- -3'
miRNA:   3'- gGCCAGGUUGU---------------UGUCGCa--GCaGGcuu -5'
21468 5' -54.2 NC_004812.1 + 84213 0.66 0.956507
Target:  5'- aCCGGcaccgCCGACcgcaAACGGCGUCuguGUCaCGAAc -3'
miRNA:   3'- -GGCCa----GGUUG----UUGUCGCAG---CAG-GCUU- -5'
21468 5' -54.2 NC_004812.1 + 130921 0.66 0.956507
Target:  5'- gCCGGcCCcgcgGACGACGGCGgggacagCGcCCGGg -3'
miRNA:   3'- -GGCCaGG----UUGUUGUCGCa------GCaGGCUu -5'
21468 5' -54.2 NC_004812.1 + 96164 0.66 0.956507
Target:  5'- gCUGGUUCGAgGGCGGCGgcgagguggUCGcgCCGGAg -3'
miRNA:   3'- -GGCCAGGUUgUUGUCGC---------AGCa-GGCUU- -5'
21468 5' -54.2 NC_004812.1 + 5413 0.66 0.956507
Target:  5'- gCCGGcCCcgcgGACGACGGCGgggacagCGcCCGGg -3'
miRNA:   3'- -GGCCaGG----UUGUUGUCGCa------GCaGGCUu -5'
21468 5' -54.2 NC_004812.1 + 21975 0.66 0.956125
Target:  5'- uCCGGgcCCAGCcgcuggaggaacaGGCAGCGgCGcUCCGAGa -3'
miRNA:   3'- -GGCCa-GGUUG-------------UUGUCGCaGC-AGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.