miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21472 3' -56.8 NC_004812.1 + 154808 0.66 0.884771
Target:  5'- -cCCCGACGuccgccaugcUGCGGcggGGCGGAGc- -3'
miRNA:   3'- gaGGGCUGCu---------ACGUCua-CCGCCUCuu -5'
21472 3' -56.8 NC_004812.1 + 118446 0.66 0.884771
Target:  5'- cCUCCCGcgggccccggcGCGGUGCAGGccacgUGGCGcGuGGu -3'
miRNA:   3'- -GAGGGC-----------UGCUACGUCU-----ACCGC-CuCUu -5'
21472 3' -56.8 NC_004812.1 + 103742 0.66 0.884771
Target:  5'- gCUCCCGugGgcGCGGAUGucuauggggccGCGGucGGGc -3'
miRNA:   3'- -GAGGGCugCuaCGUCUAC-----------CGCC--UCUu -5'
21472 3' -56.8 NC_004812.1 + 14082 0.66 0.884771
Target:  5'- aUCaCGACGAuguugcUGCGGGUGaacGCGGGGAGc -3'
miRNA:   3'- gAGgGCUGCU------ACGUCUAC---CGCCUCUU- -5'
21472 3' -56.8 NC_004812.1 + 122532 0.66 0.884771
Target:  5'- --gCCGGCGGUGagucGggGGCGGGGGg -3'
miRNA:   3'- gagGGCUGCUACgu--CuaCCGCCUCUu -5'
21472 3' -56.8 NC_004812.1 + 123907 0.66 0.884771
Target:  5'- -cCCCGACGuccgccaugcUGCGGcggGGCGGAGc- -3'
miRNA:   3'- gaGGGCUGCu---------ACGUCua-CCGCCUCuu -5'
21472 3' -56.8 NC_004812.1 + 17470 0.66 0.884771
Target:  5'- gCUCUCGAcCGcgGCGGAUGccGCGGuGGc -3'
miRNA:   3'- -GAGGGCU-GCuaCGUCUAC--CGCCuCUu -5'
21472 3' -56.8 NC_004812.1 + 153433 0.66 0.884771
Target:  5'- --gCCGGCGGUGagucGggGGCGGGGGg -3'
miRNA:   3'- gagGGCUGCUACgu--CuaCCGCCUCUu -5'
21472 3' -56.8 NC_004812.1 + 121618 0.66 0.883379
Target:  5'- gUCUCGACagGggGCGGAggcggcgcggccGGCGGAGGAg -3'
miRNA:   3'- gAGGGCUG--CuaCGUCUa-----------CCGCCUCUU- -5'
21472 3' -56.8 NC_004812.1 + 152519 0.66 0.883379
Target:  5'- gUCUCGACagGggGCGGAggcggcgcggccGGCGGAGGAg -3'
miRNA:   3'- gAGGGCUG--CuaCGUCUa-----------CCGCCUCUU- -5'
21472 3' -56.8 NC_004812.1 + 36841 0.66 0.88057
Target:  5'- gCUCUCGcggacguacugcaccACGGgcugGCGGAUGGaGGAGAAg -3'
miRNA:   3'- -GAGGGC---------------UGCUa---CGUCUACCgCCUCUU- -5'
21472 3' -56.8 NC_004812.1 + 118232 0.66 0.88057
Target:  5'- gCUCCCGGCGGgccccgccgcccgccUGCAGGaGGaguuccuGGAGAc -3'
miRNA:   3'- -GAGGGCUGCU---------------ACGUCUaCCg------CCUCUu -5'
21472 3' -56.8 NC_004812.1 + 16311 0.66 0.877725
Target:  5'- --gCgGACGA-GCGGG-GGCGGAGAc -3'
miRNA:   3'- gagGgCUGCUaCGUCUaCCGCCUCUu -5'
21472 3' -56.8 NC_004812.1 + 61874 0.66 0.877725
Target:  5'- -gCCCGGCGAccagaaAGGUGGCGaGGGGGa -3'
miRNA:   3'- gaGGGCUGCUacg---UCUACCGC-CUCUU- -5'
21472 3' -56.8 NC_004812.1 + 11356 0.66 0.877725
Target:  5'- -gCUCGACGGgagggggGCGGuaccggGGCGGGGAu -3'
miRNA:   3'- gaGGGCUGCUa------CGUCua----CCGCCUCUu -5'
21472 3' -56.8 NC_004812.1 + 41729 0.66 0.870459
Target:  5'- -cCCCGGCG-UGguGGUGaCGGGGGu -3'
miRNA:   3'- gaGGGCUGCuACguCUACcGCCUCUu -5'
21472 3' -56.8 NC_004812.1 + 105993 0.66 0.870459
Target:  5'- -gCCCGACGAuggacucgcagUGCAGcgGGcCGGcGAu -3'
miRNA:   3'- gaGGGCUGCU-----------ACGUCuaCC-GCCuCUu -5'
21472 3' -56.8 NC_004812.1 + 137317 0.66 0.86298
Target:  5'- -aCCUGACGGUGCAcgccgGGcCGGGGGc -3'
miRNA:   3'- gaGGGCUGCUACGUcua--CC-GCCUCUu -5'
21472 3' -56.8 NC_004812.1 + 72289 0.66 0.86298
Target:  5'- --gCCGA-GGUGCGGGccggGGCGGGGGGa -3'
miRNA:   3'- gagGGCUgCUACGUCUa---CCGCCUCUU- -5'
21472 3' -56.8 NC_004812.1 + 90720 0.66 0.86298
Target:  5'- gUCCCGACcGUGUc---GGCGGGGGAc -3'
miRNA:   3'- gAGGGCUGcUACGucuaCCGCCUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.