miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21475 3' -52.9 NC_004812.1 + 38871 0.66 0.979322
Target:  5'- aGCAGgUGGcgcGCGACGUcgUCgaggCUCCGCa -3'
miRNA:   3'- -CGUUgACC---CGUUGCG--AGaa--GAGGUGc -5'
21475 3' -52.9 NC_004812.1 + 13802 0.66 0.979322
Target:  5'- cGCcGC-GGGC-ACGCcgucaUCUcCUCCACGa -3'
miRNA:   3'- -CGuUGaCCCGuUGCG-----AGAaGAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 14754 0.66 0.979094
Target:  5'- cGCGGCUgcuccggGGGCGacgacACGCUCgcgUCcCCGCc -3'
miRNA:   3'- -CGUUGA-------CCCGU-----UGCGAGa--AGaGGUGc -5'
21475 3' -52.9 NC_004812.1 + 86176 0.66 0.978397
Target:  5'- cGCGACUGcGGUucguccgugucuCGCUCgcuccguucCUCCGCGg -3'
miRNA:   3'- -CGUUGAC-CCGuu----------GCGAGaa-------GAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 70128 0.66 0.976952
Target:  5'- cGUGGCUGcGGCccGCGUUCggcCUCCGCc -3'
miRNA:   3'- -CGUUGAC-CCGu-UGCGAGaa-GAGGUGc -5'
21475 3' -52.9 NC_004812.1 + 102894 0.66 0.976952
Target:  5'- -gGACUGGGCGcccaaGCGCcccUCggUCUgCACGc -3'
miRNA:   3'- cgUUGACCCGU-----UGCG---AGa-AGAgGUGC- -5'
21475 3' -52.9 NC_004812.1 + 22721 0.66 0.976952
Target:  5'- cGCGACcgaGGGCGACGagcccgUCUCgCGCGc -3'
miRNA:   3'- -CGUUGa--CCCGUUGCgaga--AGAG-GUGC- -5'
21475 3' -52.9 NC_004812.1 + 109677 0.66 0.976952
Target:  5'- cGCGGCUGucGGCGGCGgaUgugUCcgCCGCGg -3'
miRNA:   3'- -CGUUGAC--CCGUUGCgaGa--AGa-GGUGC- -5'
21475 3' -52.9 NC_004812.1 + 76068 0.66 0.974388
Target:  5'- cGCGGCcggcgcGGGCGucccggucCGCgagCUUCUCCGCc -3'
miRNA:   3'- -CGUUGa-----CCCGUu-------GCGa--GAAGAGGUGc -5'
21475 3' -52.9 NC_004812.1 + 106513 0.66 0.974388
Target:  5'- cGCGGCgcgGGGCGccggcggccgcgGCGC-CUUCgUCACGu -3'
miRNA:   3'- -CGUUGa--CCCGU------------UGCGaGAAGaGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 114924 0.66 0.97358
Target:  5'- aGguACUGGGCGAgGCacucgucgacgaccUCggCgUCCGCGg -3'
miRNA:   3'- -CguUGACCCGUUgCG--------------AGaaG-AGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 26497 0.66 0.971623
Target:  5'- -gAGCUGGGCGACGCggcgCggCagUACGc -3'
miRNA:   3'- cgUUGACCCGUUGCGa---GaaGagGUGC- -5'
21475 3' -52.9 NC_004812.1 + 40099 0.66 0.971623
Target:  5'- gGCGGCcGGGC-GCGCg--UCcgUCCGCGa -3'
miRNA:   3'- -CGUUGaCCCGuUGCGagaAG--AGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 152005 0.66 0.971623
Target:  5'- -gAGCUGGGCGACGCggcgCggCagUACGc -3'
miRNA:   3'- cgUUGACCCGUUGCGa---GaaGagGUGC- -5'
21475 3' -52.9 NC_004812.1 + 110978 0.66 0.971623
Target:  5'- cGCcGC-GGGCAGCGCggccgUCcCCGCGc -3'
miRNA:   3'- -CGuUGaCCCGUUGCGaga--AGaGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 20699 0.66 0.969864
Target:  5'- aGCAGCUGcaGGUAGCGCUCguagugggggcgcaUCagCGCGa -3'
miRNA:   3'- -CGUUGAC--CCGUUGCGAGa-------------AGagGUGC- -5'
21475 3' -52.9 NC_004812.1 + 103802 0.66 0.968649
Target:  5'- cCAGCUGGGUcGCGC-CgacgUgaCCACGg -3'
miRNA:   3'- cGUUGACCCGuUGCGaGa---AgaGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 93689 0.66 0.968649
Target:  5'- uGCGACaGGGC-GCGC-CcgUUCCGCGc -3'
miRNA:   3'- -CGUUGaCCCGuUGCGaGaaGAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 108760 0.66 0.968649
Target:  5'- uGCGGCUGGGgGGCGCgggggcgC-CUACGa -3'
miRNA:   3'- -CGUUGACCCgUUGCGagaa---GaGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 18110 0.66 0.968649
Target:  5'- cGCgGACgacGCGGCGCUCguaccgCUCCGCGu -3'
miRNA:   3'- -CG-UUGaccCGUUGCGAGaa----GAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.