miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21475 3' -52.9 NC_004812.1 + 42189 0.67 0.965461
Target:  5'- aGCGGgccCUGGGCGAgGCg--UCUCC-CGu -3'
miRNA:   3'- -CGUU---GACCCGUUgCGagaAGAGGuGC- -5'
21475 3' -52.9 NC_004812.1 + 98160 0.67 0.965461
Target:  5'- aGCgAGgUGGGCGACGacagcaccggCggCUCCGCGg -3'
miRNA:   3'- -CG-UUgACCCGUUGCga--------GaaGAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 67626 0.67 0.96205
Target:  5'- cGCGGCcaggcacGGCAGCGC-CUgCUCCACc -3'
miRNA:   3'- -CGUUGac-----CCGUUGCGaGAaGAGGUGc -5'
21475 3' -52.9 NC_004812.1 + 103253 0.67 0.960983
Target:  5'- gGCGGCcGGGCGACGCggCggcgaccccgaagccCUCCGCc -3'
miRNA:   3'- -CGUUGaCCCGUUGCGa-Gaa-------------GAGGUGc -5'
21475 3' -52.9 NC_004812.1 + 83861 0.67 0.958413
Target:  5'- aGCGGCgggGGGCGGCGCUg----CCGCc -3'
miRNA:   3'- -CGUUGa--CCCGUUGCGAgaagaGGUGc -5'
21475 3' -52.9 NC_004812.1 + 121015 0.67 0.958413
Target:  5'- cGCGGC-GGGCcgggGGCGCUCccCUCgGCGc -3'
miRNA:   3'- -CGUUGaCCCG----UUGCGAGaaGAGgUGC- -5'
21475 3' -52.9 NC_004812.1 + 124186 0.67 0.958413
Target:  5'- gGCGGCUGGGCGcggcCGCg---C-CCGCGg -3'
miRNA:   3'- -CGUUGACCCGUu---GCGagaaGaGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 82002 0.67 0.958413
Target:  5'- aGgAGCUGGGCGugGC-CguggagcgCCACGa -3'
miRNA:   3'- -CgUUGACCCGUugCGaGaaga----GGUGC- -5'
21475 3' -52.9 NC_004812.1 + 151916 0.67 0.958413
Target:  5'- cGCGGC-GGGCcgggGGCGCUCccCUCgGCGc -3'
miRNA:   3'- -CGUUGaCCCG----UUGCGAGaaGAGgUGC- -5'
21475 3' -52.9 NC_004812.1 + 43353 0.67 0.954544
Target:  5'- cGCuGC-GGGCGAaGCUCUcgcugacgcgCUCCGCGg -3'
miRNA:   3'- -CGuUGaCCCGUUgCGAGAa---------GAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 107839 0.67 0.954544
Target:  5'- gGUAGCgGGGCAgGCGCUCcagcaggC-CCGCGa -3'
miRNA:   3'- -CGUUGaCCCGU-UGCGAGaa-----GaGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 19029 0.67 0.954544
Target:  5'- cGCAGCgcGGGCGGCaGCcUCUcggCCGCGg -3'
miRNA:   3'- -CGUUGa-CCCGUUG-CG-AGAagaGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 129050 0.67 0.950438
Target:  5'- cGCGGCgccGGGCcg-GCUCUUCUUgCGCGc -3'
miRNA:   3'- -CGUUGa--CCCGuugCGAGAAGAG-GUGC- -5'
21475 3' -52.9 NC_004812.1 + 87146 0.67 0.950438
Target:  5'- aGCcGCUGGuGCGGCGCUCcga-CCGCc -3'
miRNA:   3'- -CGuUGACC-CGUUGCGAGaagaGGUGc -5'
21475 3' -52.9 NC_004812.1 + 22668 0.67 0.950438
Target:  5'- --uACUGGGCGAgGUcCUcUUCCGCGa -3'
miRNA:   3'- cguUGACCCGUUgCGaGAaGAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 3542 0.67 0.950438
Target:  5'- cGCGGCgccGGGCcg-GCUCUUCUUgCGCGc -3'
miRNA:   3'- -CGUUGa--CCCGuugCGAGAAGAG-GUGC- -5'
21475 3' -52.9 NC_004812.1 + 4532 0.68 0.946092
Target:  5'- cGCuGCUGGGCGGcCGCagCU--UCCACa -3'
miRNA:   3'- -CGuUGACCCGUU-GCGa-GAagAGGUGc -5'
21475 3' -52.9 NC_004812.1 + 112862 0.68 0.946092
Target:  5'- cGC-GCUGGGCucacgccaacGCGCUCa--UCCGCGc -3'
miRNA:   3'- -CGuUGACCCGu---------UGCGAGaagAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 35433 0.68 0.946092
Target:  5'- cGCuGCUGGGCGGcCGCagCU--UCCACa -3'
miRNA:   3'- -CGuUGACCCGUU-GCGa-GAagAGGUGc -5'
21475 3' -52.9 NC_004812.1 + 62245 0.68 0.941502
Target:  5'- cGCcGCaGGGCGGCGCUCcaacgCCGCc -3'
miRNA:   3'- -CGuUGaCCCGUUGCGAGaaga-GGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.