miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21475 3' -52.9 NC_004812.1 + 69999 0.68 0.922935
Target:  5'- --cGCUGGGCAAcCGCgccgcggcccgcaaCUUCaUCCGCGg -3'
miRNA:   3'- cguUGACCCGUU-GCGa-------------GAAG-AGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 30377 0.69 0.889083
Target:  5'- gGCGGCcGGGuCGGgGCUCUcCUCCGgGg -3'
miRNA:   3'- -CGUUGaCCC-GUUgCGAGAaGAGGUgC- -5'
21475 3' -52.9 NC_004812.1 + 61296 0.69 0.895885
Target:  5'- gGCGugcGGGCcGCGCUUccCUCCGCGg -3'
miRNA:   3'- -CGUugaCCCGuUGCGAGaaGAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 21068 0.69 0.908769
Target:  5'- gGCuGACgucgGGGCGGagGUaCUUCUCCACGa -3'
miRNA:   3'- -CG-UUGa---CCCGUUg-CGaGAAGAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 75992 0.69 0.908769
Target:  5'- cGCAGCUcgacGGCGucgaacucgGCGCggUUCUCCACGc -3'
miRNA:   3'- -CGUUGAc---CCGU---------UGCGagAAGAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 59397 0.69 0.914845
Target:  5'- aGCGACgUGGGCAcCGC-CgggUCCACGu -3'
miRNA:   3'- -CGUUG-ACCCGUuGCGaGaagAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 47733 0.69 0.917206
Target:  5'- gGCGGCgGGGUgcugcagaaaaucgcGGCGCUCUUCUgcguucccgucUCGCGg -3'
miRNA:   3'- -CGUUGaCCCG---------------UUGCGAGAAGA-----------GGUGC- -5'
21475 3' -52.9 NC_004812.1 + 26190 0.68 0.920673
Target:  5'- gGCGACggGGGCGGCGCguag-UCCGCc -3'
miRNA:   3'- -CGUUGa-CCCGUUGCGagaagAGGUGc -5'
21475 3' -52.9 NC_004812.1 + 99499 0.68 0.920673
Target:  5'- -gGACUGGGCGcCGUUCUUgaacggggUCCGCGc -3'
miRNA:   3'- cgUUGACCCGUuGCGAGAAg-------AGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 75446 0.7 0.881329
Target:  5'- gGCGGCcGGGUcgccgcggaggcgGACGgUCUgCUCCGCGg -3'
miRNA:   3'- -CGUUGaCCCG-------------UUGCgAGAaGAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 25645 0.7 0.867282
Target:  5'- aGCAGCgcgcGGGCGGCcgGCUCgUUCgUCCGCc -3'
miRNA:   3'- -CGUUGa---CCCGUUG--CGAG-AAG-AGGUGc -5'
21475 3' -52.9 NC_004812.1 + 74525 0.7 0.859568
Target:  5'- gGCGGCccaGGGCGucgGCGUUCaUCUcCCACGg -3'
miRNA:   3'- -CGUUGa--CCCGU---UGCGAGaAGA-GGUGC- -5'
21475 3' -52.9 NC_004812.1 + 49200 0.74 0.650591
Target:  5'- uGCAGCUGGGC-AUGCUCaUC-CCGgGg -3'
miRNA:   3'- -CGUUGACCCGuUGCGAGaAGaGGUgC- -5'
21475 3' -52.9 NC_004812.1 + 78051 0.73 0.722673
Target:  5'- cGCA----GGCGGCGCUCgagCUCCGCGa -3'
miRNA:   3'- -CGUugacCCGUUGCGAGaa-GAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 108579 0.72 0.789852
Target:  5'- cGCGccccGCUcGGGCAgcgcggccuaaccACGCUCUUCgugcaCCACGa -3'
miRNA:   3'- -CGU----UGA-CCCGU-------------UGCGAGAAGa----GGUGC- -5'
21475 3' -52.9 NC_004812.1 + 100151 0.72 0.790781
Target:  5'- gGCGGCgGGGCGGgGCUCaUCgcgCCGCc -3'
miRNA:   3'- -CGUUGaCCCGUUgCGAGaAGa--GGUGc -5'
21475 3' -52.9 NC_004812.1 + 81744 0.71 0.817932
Target:  5'- uGCAGCUcgcGGaGCAGCuGCUCgaugUUCUCCGCc -3'
miRNA:   3'- -CGUUGA---CC-CGUUG-CGAG----AAGAGGUGc -5'
21475 3' -52.9 NC_004812.1 + 57946 0.71 0.826643
Target:  5'- uGCAGCUGcGGCGugcgguuucccAgGCUCUUCacggcggCCACGa -3'
miRNA:   3'- -CGUUGAC-CCGU-----------UgCGAGAAGa------GGUGC- -5'
21475 3' -52.9 NC_004812.1 + 136556 0.71 0.846783
Target:  5'- cGCGACgcgGGGCcugauggccuaccggGACGCUCgccgcCUCUACGc -3'
miRNA:   3'- -CGUUGa--CCCG---------------UUGCGAGaa---GAGGUGC- -5'
21475 3' -52.9 NC_004812.1 + 97125 0.7 0.851639
Target:  5'- cGCcGCcGcGGCGGCGCgCcUCUCCGCGg -3'
miRNA:   3'- -CGuUGaC-CCGUUGCGaGaAGAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.