miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21475 5' -57.9 NC_004812.1 + 134837 0.65 0.885103
Target:  5'- gCGCGccccgggGGGUGGCGaccgaCGGCGCgucggcggcagaCGCCCCc -3'
miRNA:   3'- -GCGCa------CCUACUGC-----GCUGCGa-----------GUGGGG- -5'
21475 5' -57.9 NC_004812.1 + 73723 0.66 0.882399
Target:  5'- cCGCGaGGAgguGCGCGuguCGgccgcccucaaccacCUCACCCCg -3'
miRNA:   3'- -GCGCaCCUac-UGCGCu--GC---------------GAGUGGGG- -5'
21475 5' -57.9 NC_004812.1 + 148437 0.66 0.879661
Target:  5'- aGCGUGGGgu-CGCGGUGaguccCUCGCCCg -3'
miRNA:   3'- gCGCACCUacuGCGCUGC-----GAGUGGGg -5'
21475 5' -57.9 NC_004812.1 + 142152 0.66 0.879661
Target:  5'- uGCGUGG-UGACcgggGCGACGCggAUCgCg -3'
miRNA:   3'- gCGCACCuACUG----CGCUGCGagUGGgG- -5'
21475 5' -57.9 NC_004812.1 + 88950 0.66 0.879661
Target:  5'- gGCGaGGAgGGCGCGGCcgGCggccagggGCCCCa -3'
miRNA:   3'- gCGCaCCUaCUGCGCUG--CGag------UGGGG- -5'
21475 5' -57.9 NC_004812.1 + 81670 0.66 0.879661
Target:  5'- cCGCGgc----GCGCGACgGCUC-CCCCg -3'
miRNA:   3'- -GCGCaccuacUGCGCUG-CGAGuGGGG- -5'
21475 5' -57.9 NC_004812.1 + 86596 0.66 0.879661
Target:  5'- cCGC--GGAUGAaguugcgggcCGCGGCGCggUugCCCa -3'
miRNA:   3'- -GCGcaCCUACU----------GCGCUGCGa-GugGGG- -5'
21475 5' -57.9 NC_004812.1 + 49962 0.66 0.879661
Target:  5'- gCGCuuGUGGAUGACGauguCGAUGCcugCGuCCUCg -3'
miRNA:   3'- -GCG--CACCUACUGC----GCUGCGa--GU-GGGG- -5'
21475 5' -57.9 NC_004812.1 + 19423 0.66 0.879661
Target:  5'- gCGCGUGGcc-GCGCGGcCGCaggacCGCCUCc -3'
miRNA:   3'- -GCGCACCuacUGCGCU-GCGa----GUGGGG- -5'
21475 5' -57.9 NC_004812.1 + 94110 0.66 0.879661
Target:  5'- gGCGaauccGGcgGGCGCGugGUcCGCgCCg -3'
miRNA:   3'- gCGCa----CCuaCUGCGCugCGaGUGgGG- -5'
21475 5' -57.9 NC_004812.1 + 109600 0.66 0.879661
Target:  5'- uCGgGUGGccAUGGCGCcccgggggcaGGCGUUCGCagCCCu -3'
miRNA:   3'- -GCgCACC--UACUGCG----------CUGCGAGUG--GGG- -5'
21475 5' -57.9 NC_004812.1 + 138103 0.66 0.879661
Target:  5'- gGCG-GGAUGGgGUcuccggcucGACGCcccucCGCCCCu -3'
miRNA:   3'- gCGCaCCUACUgCG---------CUGCGa----GUGGGG- -5'
21475 5' -57.9 NC_004812.1 + 78382 0.66 0.879661
Target:  5'- cCGCgGUGGGcgacuuucUGGCGuCGACGCgcaugACCCUc -3'
miRNA:   3'- -GCG-CACCU--------ACUGC-GCUGCGag---UGGGG- -5'
21475 5' -57.9 NC_004812.1 + 135793 0.66 0.879661
Target:  5'- aCGCGgauggugacgaGGcgGGCGcCGACGCgggCGCgCCg -3'
miRNA:   3'- -GCGCa----------CCuaCUGC-GCUGCGa--GUGgGG- -5'
21475 5' -57.9 NC_004812.1 + 119487 0.66 0.879661
Target:  5'- cCGCGgcGGccGACGCgGGCGCcaaCACCgCCu -3'
miRNA:   3'- -GCGCa-CCuaCUGCG-CUGCGa--GUGG-GG- -5'
21475 5' -57.9 NC_004812.1 + 105885 0.66 0.879661
Target:  5'- gCGCGcGGu--GCGCuGGCGCUCGCgUCg -3'
miRNA:   3'- -GCGCaCCuacUGCG-CUGCGAGUGgGG- -5'
21475 5' -57.9 NC_004812.1 + 133355 0.66 0.878971
Target:  5'- gGcCGUGGAccUGGCGCaGGuagguccCGCUCAgcaccCCCCg -3'
miRNA:   3'- gC-GCACCU--ACUGCG-CU-------GCGAGU-----GGGG- -5'
21475 5' -57.9 NC_004812.1 + 70982 0.66 0.872672
Target:  5'- gGCGUGGGgccgGaACGCcuccaGAcggccCGCUCGCCgCCg -3'
miRNA:   3'- gCGCACCUa---C-UGCG-----CU-----GCGAGUGG-GG- -5'
21475 5' -57.9 NC_004812.1 + 104716 0.66 0.872672
Target:  5'- gGCGUGcGUGGcCGCcACGC--GCCCCa -3'
miRNA:   3'- gCGCACcUACU-GCGcUGCGagUGGGG- -5'
21475 5' -57.9 NC_004812.1 + 70109 0.66 0.872672
Target:  5'- aGCaG-GGAggcgccgGGCGCGugGCUgCGgCCCg -3'
miRNA:   3'- gCG-CaCCUa------CUGCGCugCGA-GUgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.