miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21475 5' -57.9 NC_004812.1 + 143 0.67 0.818367
Target:  5'- gCGCGUGGcgc-CGCGcCGCcgCGCCCg -3'
miRNA:   3'- -GCGCACCuacuGCGCuGCGa-GUGGGg -5'
21475 5' -57.9 NC_004812.1 + 576 0.72 0.541157
Target:  5'- cCGCGUGGAgccgcgGGCGCGgcuccgguaGCGCggACCCg -3'
miRNA:   3'- -GCGCACCUa-----CUGCGC---------UGCGagUGGGg -5'
21475 5' -57.9 NC_004812.1 + 745 0.73 0.512459
Target:  5'- gGgGUGGGggcGGCGCGACcCUCuuCCCCg -3'
miRNA:   3'- gCgCACCUa--CUGCGCUGcGAGu-GGGG- -5'
21475 5' -57.9 NC_004812.1 + 785 0.67 0.809916
Target:  5'- cCGCG-GGA-GAUGgGcCGC-CGCCCCc -3'
miRNA:   3'- -GCGCaCCUaCUGCgCuGCGaGUGGGG- -5'
21475 5' -57.9 NC_004812.1 + 1641 0.79 0.243448
Target:  5'- gGCGgaucGAUGACGCGcCGCUC-CCCCg -3'
miRNA:   3'- gCGCac--CUACUGCGCuGCGAGuGGGG- -5'
21475 5' -57.9 NC_004812.1 + 1771 0.67 0.826659
Target:  5'- uGCGUcccucGGggGGC-CGGcCGCUCcGCCCCg -3'
miRNA:   3'- gCGCA-----CCuaCUGcGCU-GCGAG-UGGGG- -5'
21475 5' -57.9 NC_004812.1 + 1808 0.71 0.599957
Target:  5'- aGCaUGGcgGACGuCGGgGC-CGCCCCg -3'
miRNA:   3'- gCGcACCuaCUGC-GCUgCGaGUGGGG- -5'
21475 5' -57.9 NC_004812.1 + 2058 0.66 0.872672
Target:  5'- gGCGcGGggGAgGgGGCGCgCcCCCCg -3'
miRNA:   3'- gCGCaCCuaCUgCgCUGCGaGuGGGG- -5'
21475 5' -57.9 NC_004812.1 + 2807 0.66 0.850505
Target:  5'- aGaCGUGGcgGcGCGCGACGgCggGCCCg -3'
miRNA:   3'- gC-GCACCuaC-UGCGCUGC-GagUGGGg -5'
21475 5' -57.9 NC_004812.1 + 3401 0.68 0.78368
Target:  5'- gGCGgagGGcgccGGCGUGugGCUgGgCCCCg -3'
miRNA:   3'- gCGCa--CCua--CUGCGCugCGAgU-GGGG- -5'
21475 5' -57.9 NC_004812.1 + 3629 0.71 0.609872
Target:  5'- gCGCGccGGcgGgcGCGCGGCGC-CGCCCg -3'
miRNA:   3'- -GCGCa-CCuaC--UGCGCUGCGaGUGGGg -5'
21475 5' -57.9 NC_004812.1 + 4167 0.68 0.746941
Target:  5'- gCGCG-GcGAUGAcgccCGCGGCGCcgUACCCg -3'
miRNA:   3'- -GCGCaC-CUACU----GCGCUGCGa-GUGGGg -5'
21475 5' -57.9 NC_004812.1 + 4364 0.68 0.782785
Target:  5'- gCGCGUGcaacAUGGCGCG-CGCccuggccgaggcgUCGCCCg -3'
miRNA:   3'- -GCGCACc---UACUGCGCuGCG-------------AGUGGGg -5'
21475 5' -57.9 NC_004812.1 + 4588 0.67 0.842735
Target:  5'- gCGCGU-GAUGAgggcguacugcCGCGcCGCgUCGCCCa -3'
miRNA:   3'- -GCGCAcCUACU-----------GCGCuGCG-AGUGGGg -5'
21475 5' -57.9 NC_004812.1 + 4716 0.72 0.521959
Target:  5'- gCGCGaGGAcggGGCGUGugccCGCUCGCCCg -3'
miRNA:   3'- -GCGCaCCUa--CUGCGCu---GCGAGUGGGg -5'
21475 5' -57.9 NC_004812.1 + 5729 0.7 0.639682
Target:  5'- cCGCG-GGAggagGGCGCcgGGCGC-CGCCCa -3'
miRNA:   3'- -GCGCaCCUa---CUGCG--CUGCGaGUGGGg -5'
21475 5' -57.9 NC_004812.1 + 5911 0.76 0.349422
Target:  5'- gGCG-GGcgGAgccgcCGCGACGC-CGCCCCg -3'
miRNA:   3'- gCGCaCCuaCU-----GCGCUGCGaGUGGGG- -5'
21475 5' -57.9 NC_004812.1 + 5943 0.7 0.65954
Target:  5'- gCGCGgGGgcGAC-CGGCgGCUCcGCCCCg -3'
miRNA:   3'- -GCGCaCCuaCUGcGCUG-CGAG-UGGGG- -5'
21475 5' -57.9 NC_004812.1 + 6006 0.71 0.619802
Target:  5'- gCGCGUcGGcgcGCgGCGGCGC-CGCCCCg -3'
miRNA:   3'- -GCGCA-CCuacUG-CGCUGCGaGUGGGG- -5'
21475 5' -57.9 NC_004812.1 + 6899 0.66 0.850505
Target:  5'- uGUGUGuGGUGGucuCGgGGCGCgcugCGCCCg -3'
miRNA:   3'- gCGCAC-CUACU---GCgCUGCGa---GUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.