miRNA display CGI


Results 21 - 40 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21476 3' -60.8 NC_004812.1 + 117801 0.66 0.767194
Target:  5'- gCCGCaGcCCCCGacaccuGCGGGcGACCCuCGAGa -3'
miRNA:   3'- gGGCG-CaGGGGC------CGUCU-UUGGG-GCUC- -5'
21476 3' -60.8 NC_004812.1 + 143297 0.66 0.766294
Target:  5'- cCCCGac-CCCCGGCgcggcggagacgcGGAcGCCCCGc- -3'
miRNA:   3'- -GGGCgcaGGGGCCG-------------UCUuUGGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 67280 0.66 0.764492
Target:  5'- cUCCGCGUcgggccgggCCCCGGCgccgcAGAacugcgcgaagcgcGACgCCGGGg -3'
miRNA:   3'- -GGGCGCA---------GGGGCCG-----UCU--------------UUGgGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 46183 0.66 0.764492
Target:  5'- gCCCGUGUCCaCCaaCAGGAAgucgcgcacguaacCCCCGAc -3'
miRNA:   3'- -GGGCGCAGG-GGccGUCUUU--------------GGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 29881 0.66 0.761781
Target:  5'- cCCCGCuGUCCCCcgaccaccucgugcaGGUGGGccgcgaugcgcGGCCCgCGGGu -3'
miRNA:   3'- -GGGCG-CAGGGG---------------CCGUCU-----------UUGGG-GCUC- -5'
21476 3' -60.8 NC_004812.1 + 136435 0.66 0.75815
Target:  5'- gCCCGCucgCCCgGGUcGggG-CCCGAGc -3'
miRNA:   3'- -GGGCGca-GGGgCCGuCuuUgGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 72533 0.66 0.75815
Target:  5'- gCCgGCG-CCCgCGGCgaacgGGAAccgcGCCUCGGGg -3'
miRNA:   3'- -GGgCGCaGGG-GCCG-----UCUU----UGGGGCUC- -5'
21476 3' -60.8 NC_004812.1 + 138247 0.66 0.75815
Target:  5'- gCCCGCGggCCCGGC----GCCgCCGGu -3'
miRNA:   3'- -GGGCGCagGGGCCGucuuUGG-GGCUc -5'
21476 3' -60.8 NC_004812.1 + 77641 0.66 0.75815
Target:  5'- aCCGCc-CCCCGGUGGAAGuacUCCCGc- -3'
miRNA:   3'- gGGCGcaGGGGCCGUCUUU---GGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 124449 0.66 0.75815
Target:  5'- gUCCGCGcgggggcgCCCCgccgcGGCGGggGCCCgGc- -3'
miRNA:   3'- -GGGCGCa-------GGGG-----CCGUCuuUGGGgCuc -5'
21476 3' -60.8 NC_004812.1 + 37336 0.66 0.75815
Target:  5'- gCCCGC----CCGGCGGGggGACCgCCGGGa -3'
miRNA:   3'- -GGGCGcaggGGCCGUCU--UUGG-GGCUC- -5'
21476 3' -60.8 NC_004812.1 + 38611 0.66 0.75815
Target:  5'- gCCGaGUCCgCGGCGGggGuCUCCGc- -3'
miRNA:   3'- gGGCgCAGGgGCCGUCuuU-GGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 103257 0.66 0.75815
Target:  5'- gCCGgGcgaCgCGGCGGcGACCCCGAa -3'
miRNA:   3'- gGGCgCag-GgGCCGUCuUUGGGGCUc -5'
21476 3' -60.8 NC_004812.1 + 7710 0.66 0.75815
Target:  5'- gCCGaGUCCgCGGCGGggGuCUCCGc- -3'
miRNA:   3'- gGGCgCAGGgGCCGUCuuU-GGGGCuc -5'
21476 3' -60.8 NC_004812.1 + 54739 0.66 0.75815
Target:  5'- -gCGCGcCCCCGGgGGu-ACCUgGGGg -3'
miRNA:   3'- ggGCGCaGGGGCCgUCuuUGGGgCUC- -5'
21476 3' -60.8 NC_004812.1 + 6435 0.66 0.75815
Target:  5'- gCCCGC----CCGGCGGGggGACCgCCGGGa -3'
miRNA:   3'- -GGGCGcaggGGCCGUCU--UUGG-GGCUC- -5'
21476 3' -60.8 NC_004812.1 + 38430 0.66 0.75815
Target:  5'- gCCGCGUCgaCCGGCuccuGGuuaaGGCCgCCGAc -3'
miRNA:   3'- gGGCGCAGg-GGCCGu---CU----UUGG-GGCUc -5'
21476 3' -60.8 NC_004812.1 + 58378 0.66 0.75815
Target:  5'- gCCGCGccgCCCC-GCGGAGACCaggCGGc -3'
miRNA:   3'- gGGCGCa--GGGGcCGUCUUUGGg--GCUc -5'
21476 3' -60.8 NC_004812.1 + 111814 0.66 0.75724
Target:  5'- cCCCGCGgagguguuggucgUCCCCGccGCcGAGACCCUc-- -3'
miRNA:   3'- -GGGCGC-------------AGGGGC--CGuCUUUGGGGcuc -5'
21476 3' -60.8 NC_004812.1 + 121743 0.66 0.752675
Target:  5'- aCCGCGgucgugcuucgcucaUcCCCCGGCucuucGCCCUGAGc -3'
miRNA:   3'- gGGCGC---------------A-GGGGCCGucuu-UGGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.