miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21476 5' -57.9 NC_004812.1 + 106713 0.67 0.754581
Target:  5'- cGCUgCGcgugCUGCUGGCGGgCGAGg- -3'
miRNA:   3'- cUGAgGCaa--GACGACCGCCgGUUCga -5'
21476 5' -57.9 NC_004812.1 + 155132 0.67 0.754581
Target:  5'- uGGCUCCGcggCgGCgGGgGGCCGGGUc -3'
miRNA:   3'- -CUGAGGCaa-GaCGaCCgCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 124231 0.67 0.754581
Target:  5'- uGGCUCCGcggCgGCgGGgGGCCGGGUc -3'
miRNA:   3'- -CUGAGGCaa-GaCGaCCgCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 119476 0.67 0.744948
Target:  5'- -cCUCC--UCUGCgccgcGGCGGCCGAcGCg -3'
miRNA:   3'- cuGAGGcaAGACGa----CCGCCGGUU-CGa -5'
21476 5' -57.9 NC_004812.1 + 83332 0.67 0.743979
Target:  5'- uACUCCGaguacgacagccUggacgcgCUGCUGGCGGCCcgccuggGGGCg -3'
miRNA:   3'- cUGAGGC------------Aa------GACGACCGCCGG-------UUCGa -5'
21476 5' -57.9 NC_004812.1 + 58953 0.67 0.735215
Target:  5'- uGGCcugCCGUgagGCUGGgGGCCGAGa- -3'
miRNA:   3'- -CUGa--GGCAagaCGACCgCCGGUUCga -5'
21476 5' -57.9 NC_004812.1 + 95511 0.68 0.715492
Target:  5'- cGugUCCGgcCgGggGGCuGGCCGAGCUg -3'
miRNA:   3'- -CugAGGCaaGaCgaCCG-CCGGUUCGA- -5'
21476 5' -57.9 NC_004812.1 + 107579 0.68 0.715492
Target:  5'- cGACggacaUGUacaUCUGCaggaUGGUGGCCAGGCa -3'
miRNA:   3'- -CUGag---GCA---AGACG----ACCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 78557 0.68 0.705519
Target:  5'- gGGCUCCGggg-GCUGGCGaucccgcagcgcGUCGAGCg -3'
miRNA:   3'- -CUGAGGCaagaCGACCGC------------CGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 115807 0.68 0.695484
Target:  5'- cGGCagCCGUUgUGaggcgaGGCGGCCGGGCc -3'
miRNA:   3'- -CUGa-GGCAAgACga----CCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 40830 0.68 0.695484
Target:  5'- cGCUgCCGUUguguugGCUGGUGGUUAGGCUu -3'
miRNA:   3'- cUGA-GGCAAga----CGACCGCCGGUUCGA- -5'
21476 5' -57.9 NC_004812.1 + 118878 0.68 0.685396
Target:  5'- cGCUCCcgGggCcagaGCUcGGCGGCCAGGCg -3'
miRNA:   3'- cUGAGG--CaaGa---CGA-CCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 76241 0.69 0.665098
Target:  5'- aACUCCcc-CUcGCaGGCGGCCAGGCc -3'
miRNA:   3'- cUGAGGcaaGA-CGaCCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 123577 0.69 0.665098
Target:  5'- gGGCcgCCGggg-GC-GGCGGCCGAGCa -3'
miRNA:   3'- -CUGa-GGCaagaCGaCCGCCGGUUCGa -5'
21476 5' -57.9 NC_004812.1 + 145659 0.69 0.644693
Target:  5'- gGugUCCGUga-GCUGGCGccgaCCGAGCUc -3'
miRNA:   3'- -CugAGGCAagaCGACCGCc---GGUUCGA- -5'
21476 5' -57.9 NC_004812.1 + 101686 0.69 0.644693
Target:  5'- cGACUCCGacugCccGCUGGUGGCCAucgucgagugcgAGCc -3'
miRNA:   3'- -CUGAGGCaa--Ga-CGACCGCCGGU------------UCGa -5'
21476 5' -57.9 NC_004812.1 + 147978 0.69 0.624248
Target:  5'- cGCUCCGUgcUCaugGCgccgGGCGGCgGGGCc -3'
miRNA:   3'- cUGAGGCA--AGa--CGa---CCGCCGgUUCGa -5'
21476 5' -57.9 NC_004812.1 + 55396 0.69 0.614031
Target:  5'- cGGCgCCc--CUGCUGGCGGCCGcggGGCc -3'
miRNA:   3'- -CUGaGGcaaGACGACCGCCGGU---UCGa -5'
21476 5' -57.9 NC_004812.1 + 73212 0.7 0.603828
Target:  5'- cGAC-CCG-UCUGCUggaGGCGGCC-GGCc -3'
miRNA:   3'- -CUGaGGCaAGACGA---CCGCCGGuUCGa -5'
21476 5' -57.9 NC_004812.1 + 64784 0.7 0.603828
Target:  5'- gGACUCCGUcuUCgUGCUGugccGCGGCCugacGGCc -3'
miRNA:   3'- -CUGAGGCA--AG-ACGAC----CGCCGGu---UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.