miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21478 3' -52.6 NC_004812.1 + 72022 0.66 0.982108
Target:  5'- ---gUCGCUCGGgggCCGGgacgGUCUGGGg -3'
miRNA:   3'- ccaaAGCGGGCUga-GGCCa---CAGAUUC- -5'
21478 3' -52.6 NC_004812.1 + 106346 0.67 0.977713
Target:  5'- cGGUUcgCGCCCGgcgaGCUCCGG-GUg---- -3'
miRNA:   3'- -CCAAa-GCGGGC----UGAGGCCaCAgauuc -5'
21478 3' -52.6 NC_004812.1 + 62848 0.67 0.969698
Target:  5'- gGGUUUCGCCCcgggccggaaacGACUCgCGGcggccccGUCUGc- -3'
miRNA:   3'- -CCAAAGCGGG------------CUGAG-GCCa------CAGAUuc -5'
21478 3' -52.6 NC_004812.1 + 11053 0.67 0.969698
Target:  5'- cGGUggCGCCCGACcCCGGg------- -3'
miRNA:   3'- -CCAaaGCGGGCUGaGGCCacagauuc -5'
21478 3' -52.6 NC_004812.1 + 20480 0.68 0.95981
Target:  5'- aGGUUcuucacgCGCCCGACccCCGGgaagGUgUGGGu -3'
miRNA:   3'- -CCAAa------GCGGGCUGa-GGCCa---CAgAUUC- -5'
21478 3' -52.6 NC_004812.1 + 109713 0.68 0.952102
Target:  5'- cGGccgccgCGCCCGACcCCGGggcgCUGGGg -3'
miRNA:   3'- -CCaaa---GCGGGCUGaGGCCaca-GAUUC- -5'
21478 3' -52.6 NC_004812.1 + 104760 0.68 0.947465
Target:  5'- ----cCGCCCGGCcugugggUCCGgGUGUCUAc- -3'
miRNA:   3'- ccaaaGCGGGCUG-------AGGC-CACAGAUuc -5'
21478 3' -52.6 NC_004812.1 + 113327 0.69 0.923286
Target:  5'- cGGaca-GCCCcugGGCUCCGGUG-CUGGGu -3'
miRNA:   3'- -CCaaagCGGG---CUGAGGCCACaGAUUC- -5'
21478 3' -52.6 NC_004812.1 + 60992 0.69 0.923286
Target:  5'- aGGUggaGCCCGGC-CCGGUGcCg--- -3'
miRNA:   3'- -CCAaagCGGGCUGaGGCCACaGauuc -5'
21478 3' -52.6 NC_004812.1 + 21860 0.7 0.885785
Target:  5'- ----gCGUCCGACUCCaGGguugcGUCUGAGu -3'
miRNA:   3'- ccaaaGCGGGCUGAGG-CCa----CAGAUUC- -5'
21478 3' -52.6 NC_004812.1 + 62895 0.72 0.840126
Target:  5'- cGGa---GCCCGGCUCCGG-GUCa--- -3'
miRNA:   3'- -CCaaagCGGGCUGAGGCCaCAGauuc -5'
21478 3' -52.6 NC_004812.1 + 72433 0.8 0.425656
Target:  5'- cGGUUUCGCCCacgGGCUcguccgggaggauggCCGGUGUCUGGu -3'
miRNA:   3'- -CCAAAGCGGG---CUGA---------------GGCCACAGAUUc -5'
21478 3' -52.6 NC_004812.1 + 72474 1.11 0.005179
Target:  5'- cGGUUUCGCCCGACUCCGGUGUCUAAGu -3'
miRNA:   3'- -CCAAAGCGGGCUGAGGCCACAGAUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.