miRNA display CGI


Results 21 - 40 of 855 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21478 5' -63.5 NC_004812.1 + 105504 0.66 0.626542
Target:  5'- gGGCCc-GGCGGCcgagugGGUGUgCGGcCGUCa -3'
miRNA:   3'- -CCGGauCCGCCG------CCGCGaGCCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 102055 0.66 0.626542
Target:  5'- uGGCg-AGGCcggGGCcGCGC-CGGgcgCGCCg -3'
miRNA:   3'- -CCGgaUCCG---CCGcCGCGaGCCa--GCGG- -5'
21478 5' -63.5 NC_004812.1 + 49582 0.66 0.626542
Target:  5'- gGGCCUGGGgcugcUGGCGcagcaggcGCGCaUCGGccUgGCCu -3'
miRNA:   3'- -CCGGAUCC-----GCCGC--------CGCG-AGCC--AgCGG- -5'
21478 5' -63.5 NC_004812.1 + 9756 0.66 0.626542
Target:  5'- cGCCaccAGGCccGCGGCGCgccggCGGcCGCg -3'
miRNA:   3'- cCGGa--UCCGc-CGCCGCGa----GCCaGCGg -5'
21478 5' -63.5 NC_004812.1 + 154398 0.66 0.626542
Target:  5'- gGGCCgcGGGCcGCGGCGacaCGcugcUCGCCg -3'
miRNA:   3'- -CCGGa-UCCGcCGCCGCga-GCc---AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 51888 0.66 0.626542
Target:  5'- cGGCCgUGGGCGcGUGGCGgCcaCGcaCGCCc -3'
miRNA:   3'- -CCGG-AUCCGC-CGCCGC-Ga-GCcaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 137266 0.66 0.626542
Target:  5'- gGGCCgagGGGUucucGGCcccGGCGCU-GaUCGCCa -3'
miRNA:   3'- -CCGGa--UCCG----CCG---CCGCGAgCcAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 100781 0.66 0.626542
Target:  5'- cGCCgaucgugcGGUGGCGGC-CUCGG--GCCc -3'
miRNA:   3'- cCGGau------CCGCCGCCGcGAGCCagCGG- -5'
21478 5' -63.5 NC_004812.1 + 28890 0.66 0.626542
Target:  5'- gGGCCgcGGGCcGCGGCGacaCGcugcUCGCCg -3'
miRNA:   3'- -CCGGa-UCCGcCGCCGCga-GCc---AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 19599 0.66 0.626542
Target:  5'- gGGCUUGcagccGCGGCGaauCGCUCGcGcCGCCu -3'
miRNA:   3'- -CCGGAUc----CGCCGCc--GCGAGC-CaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 24516 0.66 0.626542
Target:  5'- cGCCgcGGgGGCuGCGgUCGGggcugCGUCa -3'
miRNA:   3'- cCGGauCCgCCGcCGCgAGCCa----GCGG- -5'
21478 5' -63.5 NC_004812.1 + 37809 0.66 0.626542
Target:  5'- uGGUCUcgGGGCGcGCuGCGCccgCGGg-GCCg -3'
miRNA:   3'- -CCGGA--UCCGC-CGcCGCGa--GCCagCGG- -5'
21478 5' -63.5 NC_004812.1 + 137948 0.66 0.626542
Target:  5'- cGGCCUuucccGGcGCGGCGGCcccucgucgggGCggGGUCGg- -3'
miRNA:   3'- -CCGGA-----UC-CGCCGCCG-----------CGagCCAGCgg -5'
21478 5' -63.5 NC_004812.1 + 45097 0.66 0.626542
Target:  5'- cGGCCggcGGGCgGGgGGCGUgagUCGGg-GCg -3'
miRNA:   3'- -CCGGa--UCCG-CCgCCGCG---AGCCagCGg -5'
21478 5' -63.5 NC_004812.1 + 6908 0.66 0.626542
Target:  5'- uGGUCUcgGGGCGcGCuGCGCccgCGGg-GCCg -3'
miRNA:   3'- -CCGGA--UCCGC-CGcCGCGa--GCCagCGG- -5'
21478 5' -63.5 NC_004812.1 + 97949 0.66 0.626542
Target:  5'- cGCCUGGcCGGUGGgGUccaGGgCGCCg -3'
miRNA:   3'- cCGGAUCcGCCGCCgCGag-CCaGCGG- -5'
21478 5' -63.5 NC_004812.1 + 111334 0.66 0.625579
Target:  5'- uGCCc--GCGGCGGCGCcgaccccgCGGgccccccagcucgUCGCCc -3'
miRNA:   3'- cCGGaucCGCCGCCGCGa-------GCC-------------AGCGG- -5'
21478 5' -63.5 NC_004812.1 + 83457 0.66 0.625579
Target:  5'- gGGCC-AGcgcgugcugguccGCGGCGGCGCgcCGGaUC-CCg -3'
miRNA:   3'- -CCGGaUC-------------CGCCGCCGCGa-GCC-AGcGG- -5'
21478 5' -63.5 NC_004812.1 + 132765 0.66 0.625579
Target:  5'- cGGCUcgaGGGCGGCGcCGggCcgggccggccccgGGUCGCCg -3'
miRNA:   3'- -CCGGa--UCCGCCGCcGCgaG-------------CCAGCGG- -5'
21478 5' -63.5 NC_004812.1 + 1284 0.66 0.620763
Target:  5'- cGGCCcccaggguccccggAGGCGG-GGCGCcgaccccCGGgcccCGCCg -3'
miRNA:   3'- -CCGGa-------------UCCGCCgCCGCGa------GCCa---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.