miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 3' -65 NC_004812.1 + 57795 0.66 0.554988
Target:  5'- gGCggCgCUGGCGACGgagcucuucCGGaCCGGGGUCc -3'
miRNA:   3'- -CGa-GgGGCCGCUGC---------GCCgGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 136701 0.66 0.554988
Target:  5'- cGCgguggCGGCGGCGCGGgCCGccGGUCc -3'
miRNA:   3'- -CGaggg-GCCGCUGCGCCgGGCu-CCAG- -5'
21479 3' -65 NC_004812.1 + 153313 0.66 0.554988
Target:  5'- cCUCCUCGGgugGACGCgcggugGGCCCGGGcggcGUCu -3'
miRNA:   3'- cGAGGGGCCg--CUGCG------CCGGGCUC----CAG- -5'
21479 3' -65 NC_004812.1 + 118785 0.66 0.554988
Target:  5'- --aCCUCGGCGGCGagaucCCCGAGGa- -3'
miRNA:   3'- cgaGGGGCCGCUGCgcc--GGGCUCCag -5'
21479 3' -65 NC_004812.1 + 126272 0.66 0.554988
Target:  5'- cGCcUCCCGGCGcCGCGGgCCCcuucuGGGcCu -3'
miRNA:   3'- -CGaGGGGCCGCuGCGCC-GGGc----UCCaG- -5'
21479 3' -65 NC_004812.1 + 122352 0.66 0.554988
Target:  5'- gGgUUCCCGGCGGgggcCGgGGCgCGGGG-Cg -3'
miRNA:   3'- -CgAGGGGCCGCU----GCgCCGgGCUCCaG- -5'
21479 3' -65 NC_004812.1 + 50939 0.66 0.554988
Target:  5'- --gCCCCGGCGuACGCGcCCCaccaccacgccGGGGUg -3'
miRNA:   3'- cgaGGGGCCGC-UGCGCcGGG-----------CUCCAg -5'
21479 3' -65 NC_004812.1 + 48170 0.66 0.554053
Target:  5'- gGCggCCgCGGCGcuggagaACGCGGCCCuGcAGGcCg -3'
miRNA:   3'- -CGa-GGgGCCGC-------UGCGCCGGG-C-UCCaG- -5'
21479 3' -65 NC_004812.1 + 120994 0.66 0.554053
Target:  5'- cCUCCCCcGCGuu-CGGCCCGGcgcacgccucggcGGUCg -3'
miRNA:   3'- cGAGGGGcCGCugcGCCGGGCU-------------CCAG- -5'
21479 3' -65 NC_004812.1 + 123121 0.66 0.545656
Target:  5'- uGC-CgUCGGCGGCgGCGGCgucggaggCGGGGUCg -3'
miRNA:   3'- -CGaGgGGCCGCUG-CGCCGg-------GCUCCAG- -5'
21479 3' -65 NC_004812.1 + 81882 0.66 0.545656
Target:  5'- cGCUCCagaCGGCGACcaacaCGGUgCUGGGGcUCg -3'
miRNA:   3'- -CGAGGg--GCCGCUGc----GCCG-GGCUCC-AG- -5'
21479 3' -65 NC_004812.1 + 131054 0.66 0.545656
Target:  5'- cGCgagCCCGGCGAgGCG-CCCGcGGa- -3'
miRNA:   3'- -CGag-GGGCCGCUgCGCcGGGCuCCag -5'
21479 3' -65 NC_004812.1 + 70110 0.66 0.545656
Target:  5'- cGCUUCCCGGgGGCccgcaGCGGCUCc--GUCa -3'
miRNA:   3'- -CGAGGGGCCgCUG-----CGCCGGGcucCAG- -5'
21479 3' -65 NC_004812.1 + 154022 0.66 0.545656
Target:  5'- uGC-CgUCGGCGGCgGCGGCgucggaggCGGGGUCg -3'
miRNA:   3'- -CGaGgGGCCGCUG-CGCCGg-------GCUCCAG- -5'
21479 3' -65 NC_004812.1 + 146846 0.66 0.545656
Target:  5'- cGCggCCgCCGGCGcgcCGCgGGCCUGGuggcGGUCc -3'
miRNA:   3'- -CGa-GG-GGCCGCu--GCG-CCGGGCU----CCAG- -5'
21479 3' -65 NC_004812.1 + 153907 0.66 0.545656
Target:  5'- gGC-CUCCGGCcGCGUcuucgGGCCCGGcGUCu -3'
miRNA:   3'- -CGaGGGGCCGcUGCG-----CCGGGCUcCAG- -5'
21479 3' -65 NC_004812.1 + 103602 0.66 0.545656
Target:  5'- cGCgcgCCCCGG-GACGUGcuacagccGCCCccuGGUCa -3'
miRNA:   3'- -CGa--GGGGCCgCUGCGC--------CGGGcu-CCAG- -5'
21479 3' -65 NC_004812.1 + 129547 0.66 0.545656
Target:  5'- aCUCggCGGCGGCgGCGGCCgCGGcGUCg -3'
miRNA:   3'- cGAGggGCCGCUG-CGCCGG-GCUcCAG- -5'
21479 3' -65 NC_004812.1 + 44570 0.66 0.545656
Target:  5'- cCUCCCCGaaaaucuCGGCGUaGGCCCGcgacAGGUg -3'
miRNA:   3'- cGAGGGGCc------GCUGCG-CCGGGC----UCCAg -5'
21479 3' -65 NC_004812.1 + 1096 0.66 0.545656
Target:  5'- uCUCCuCCuGCccgGCGGCCCG-GGUCg -3'
miRNA:   3'- cGAGG-GGcCGcugCGCCGGGCuCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.