miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 5' -57.8 NC_004812.1 + 36295 0.67 0.796715
Target:  5'- aGGGggGUCGGGGuCUCccagggacgcgGCgGGCCg--- -3'
miRNA:   3'- -CCCuaCAGCCCU-GAG-----------CGgCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 130905 0.67 0.796715
Target:  5'- cGGGGccg-GGGGCgUCGCCGGCCc--- -3'
miRNA:   3'- -CCCUacagCCCUG-AGCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 5394 0.67 0.796715
Target:  5'- aGGGggGUCGGGGuCUCccagggacgcgGCgGGCCg--- -3'
miRNA:   3'- -CCCuaCAGCCCU-GAG-----------CGgCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 71784 0.67 0.796715
Target:  5'- cGGGggGgCGGGGgUCGCCGaaGCCg--- -3'
miRNA:   3'- -CCCuaCaGCCCUgAGCGGC--CGGauau -5'
21479 5' -57.8 NC_004812.1 + 106065 0.67 0.796715
Target:  5'- aGGGAgacUGgcgcgUGGGugUCGC-GGCCUGc- -3'
miRNA:   3'- -CCCU---ACa----GCCCugAGCGgCCGGAUau -5'
21479 5' -57.8 NC_004812.1 + 5397 0.67 0.796715
Target:  5'- cGGGGccg-GGGGCgUCGCCGGCCc--- -3'
miRNA:   3'- -CCCUacagCCCUG-AGCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 68577 0.67 0.78777
Target:  5'- cGGGAca--GGGACagGCCGGCCc--- -3'
miRNA:   3'- -CCCUacagCCCUGagCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 25393 0.67 0.778689
Target:  5'- gGGGAgGUCGGcGcGCUCGCCGGagaCCg--- -3'
miRNA:   3'- -CCCUaCAGCC-C-UGAGCGGCC---GGauau -5'
21479 5' -57.8 NC_004812.1 + 150901 0.67 0.778689
Target:  5'- gGGGAgGUCGGcGcGCUCGCCGGagaCCg--- -3'
miRNA:   3'- -CCCUaCAGCC-C-UGAGCGGCC---GGauau -5'
21479 5' -57.8 NC_004812.1 + 83238 0.67 0.76948
Target:  5'- cGGGAUGggggacaccgGGGGCgaggCGUCGGCCg--- -3'
miRNA:   3'- -CCCUACag--------CCCUGa---GCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 140626 0.67 0.76948
Target:  5'- cGGGGccgcgggGUCGGcGC-CGCCGGCCg--- -3'
miRNA:   3'- -CCCUa------CAGCCcUGaGCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 77954 0.68 0.763898
Target:  5'- cGGGGUGgcgggggcgaagaGGGugUCcggGCCGGCCUu-- -3'
miRNA:   3'- -CCCUACag-----------CCCugAG---CGGCCGGAuau -5'
21479 5' -57.8 NC_004812.1 + 105811 0.68 0.760153
Target:  5'- uGGGG-GUgGGGGCUCcgGCCGGCg---- -3'
miRNA:   3'- -CCCUaCAgCCCUGAG--CGGCCGgauau -5'
21479 5' -57.8 NC_004812.1 + 17599 0.68 0.760153
Target:  5'- uGGgcGUCGgaGGACUuccgCGCCGGCCUc-- -3'
miRNA:   3'- cCCuaCAGC--CCUGA----GCGGCCGGAuau -5'
21479 5' -57.8 NC_004812.1 + 83345 0.68 0.760153
Target:  5'- cGGuGAcgcacUGUCGGGuCcgCGCCGGCCc--- -3'
miRNA:   3'- -CC-CU-----ACAGCCCuGa-GCGGCCGGauau -5'
21479 5' -57.8 NC_004812.1 + 101182 0.68 0.750716
Target:  5'- gGGGAcgGUCGuGGACaaccgCGCCGcGCCg--- -3'
miRNA:   3'- -CCCUa-CAGC-CCUGa----GCGGC-CGGauau -5'
21479 5' -57.8 NC_004812.1 + 101995 0.68 0.750716
Target:  5'- cGGGggGUCGcGcGACUCGCgGcGCCg--- -3'
miRNA:   3'- -CCCuaCAGC-C-CUGAGCGgC-CGGauau -5'
21479 5' -57.8 NC_004812.1 + 107447 0.68 0.741177
Target:  5'- cGGccGUCGcGGACUCGCC-GCCg--- -3'
miRNA:   3'- cCCuaCAGC-CCUGAGCGGcCGGauau -5'
21479 5' -57.8 NC_004812.1 + 100078 0.68 0.731546
Target:  5'- cGGuGggGUCGGGGCUCGUCGuCCc--- -3'
miRNA:   3'- -CC-CuaCAGCCCUGAGCGGCcGGauau -5'
21479 5' -57.8 NC_004812.1 + 78795 0.68 0.721832
Target:  5'- gGGGGUcggccggcugggGUCGGGGgUCgGCCGGCUg--- -3'
miRNA:   3'- -CCCUA------------CAGCCCUgAG-CGGCCGGauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.