miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 154029 0.66 0.90141
Target:  5'- gGCGGCgGCGGCGUcGGaggcggGGUCGUCg-- -3'
miRNA:   3'- -UGUUGgUGUCGCA-CCa-----CCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 138713 0.66 0.90141
Target:  5'- gACGACCGCGGCGcGGcgGGCCcgc-GGc -3'
miRNA:   3'- -UGUUGGUGUCGCaCCa-CCGGcagaCC- -5'
21480 3' -56.7 NC_004812.1 + 68125 0.66 0.90141
Target:  5'- gGCGGCCGCGGCGacgaagGGCCcgguGUCgGGg -3'
miRNA:   3'- -UGUUGGUGUCGCacca--CCGG----CAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 107186 0.66 0.90141
Target:  5'- gGCGAgCGgAGCGUGGcGGUCGggcgGGg -3'
miRNA:   3'- -UGUUgGUgUCGCACCaCCGGCaga-CC- -5'
21480 3' -56.7 NC_004812.1 + 123128 0.66 0.90141
Target:  5'- gGCGGCgGCGGCGUcGGaggcggGGUCGUCg-- -3'
miRNA:   3'- -UGUUGgUGUCGCA-CCa-----CCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 58929 0.66 0.90141
Target:  5'- -aAGCCGgucuCGGCG-GG-GGCCGcCUGGc -3'
miRNA:   3'- ugUUGGU----GUCGCaCCaCCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 110910 0.66 0.895002
Target:  5'- gACAACCgggcccugcuGCAGC-UGGU-GCCGUCccgGGg -3'
miRNA:   3'- -UGUUGG----------UGUCGcACCAcCGGCAGa--CC- -5'
21480 3' -56.7 NC_004812.1 + 68913 0.66 0.895002
Target:  5'- uGCcGCCGCuGCGggccaggaUGG-GGCCGacguUCUGGg -3'
miRNA:   3'- -UGuUGGUGuCGC--------ACCaCCGGC----AGACC- -5'
21480 3' -56.7 NC_004812.1 + 81245 0.66 0.895002
Target:  5'- cGCGugCACcucGCGgaggacGGUGGCCaucacguugccGUCUGGc -3'
miRNA:   3'- -UGUugGUGu--CGCa-----CCACCGG-----------CAGACC- -5'
21480 3' -56.7 NC_004812.1 + 22731 0.66 0.893035
Target:  5'- gGCGACgagcccgucucgcgCGCGGCGUGGUGGaccuggugCGUCcaggUGGg -3'
miRNA:   3'- -UGUUG--------------GUGUCGCACCACCg-------GCAG----ACC- -5'
21480 3' -56.7 NC_004812.1 + 86612 0.66 0.892375
Target:  5'- -gGGCCGCGGCGcgguugcccagcgGGUGGUCGUg-GGu -3'
miRNA:   3'- ugUUGGUGUCGCa------------CCACCGGCAgaCC- -5'
21480 3' -56.7 NC_004812.1 + 118088 0.66 0.888369
Target:  5'- -gGACCACcGCGUGcuccGGCUGUCccUGGa -3'
miRNA:   3'- ugUUGGUGuCGCACca--CCGGCAG--ACC- -5'
21480 3' -56.7 NC_004812.1 + 99397 0.66 0.888369
Target:  5'- gGC-GCUGCGGCGgcUGG-GGUCGUCgGGg -3'
miRNA:   3'- -UGuUGGUGUCGC--ACCaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 115588 0.66 0.888369
Target:  5'- gGCuuCCGCGGCGggcGGcgGGCUGUaggGGg -3'
miRNA:   3'- -UGuuGGUGUCGCa--CCa-CCGGCAga-CC- -5'
21480 3' -56.7 NC_004812.1 + 69871 0.66 0.888369
Target:  5'- uCGGCC-CGGCGcUGGUcGCCGUCg-- -3'
miRNA:   3'- uGUUGGuGUCGC-ACCAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 35600 0.66 0.881514
Target:  5'- gGCGACCGCcgaGGCGUGcGccgGGCCGaacgCgGGg -3'
miRNA:   3'- -UGUUGGUG---UCGCAC-Ca--CCGGCa---GaCC- -5'
21480 3' -56.7 NC_004812.1 + 10960 0.66 0.881514
Target:  5'- uCAuCCGC-GCGgaaggugagaGGUGGCCGUgCUGGc -3'
miRNA:   3'- uGUuGGUGuCGCa---------CCACCGGCA-GACC- -5'
21480 3' -56.7 NC_004812.1 + 109142 0.66 0.881514
Target:  5'- cCGGCgGCGGCGacGGaccGGCCGUCgGGc -3'
miRNA:   3'- uGUUGgUGUCGCa-CCa--CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 102926 0.66 0.880816
Target:  5'- gGCGGCCGCGaacgagagccGCGggGGUGGCgggggggCGUCgGGg -3'
miRNA:   3'- -UGUUGGUGU----------CGCa-CCACCG-------GCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 81096 0.66 0.880816
Target:  5'- -gGGCCcguggcggugcggGCGGCGUGGUGGgCCGUg--- -3'
miRNA:   3'- ugUUGG-------------UGUCGCACCACC-GGCAgacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.