miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 104868 0.67 0.859664
Target:  5'- gGCGGCCGCGGCGgucgucGUcGCCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCac----CAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 126932 0.67 0.859664
Target:  5'- gGCGGCCGCGGgGaGG-GGCCGg--GGc -3'
miRNA:   3'- -UGUUGGUGUCgCaCCaCCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 130731 0.67 0.859664
Target:  5'- -aGGCCgaGCGGCGUcGGccucgcGGCCGUCgGGg -3'
miRNA:   3'- ugUUGG--UGUCGCA-CCa-----CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 76744 0.67 0.867157
Target:  5'- cGCGGCCGCcGUGUc--GGCCGUCgGGu -3'
miRNA:   3'- -UGUUGGUGuCGCAccaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 99236 0.67 0.867157
Target:  5'- uCGGCgGgGGCG-GG-GGCCGUCcGGg -3'
miRNA:   3'- uGUUGgUgUCGCaCCaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 102005 0.67 0.867157
Target:  5'- cGCGACuCGCGGCGccgccgcgagGGUGGCuCGUCc-- -3'
miRNA:   3'- -UGUUG-GUGUCGCa---------CCACCG-GCAGacc -5'
21480 3' -56.7 NC_004812.1 + 151538 0.67 0.85197
Target:  5'- gACGGCgACGGCG-GGgccggGGCCGg--GGg -3'
miRNA:   3'- -UGUUGgUGUCGCaCCa----CCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 76304 0.67 0.85197
Target:  5'- aGCAG-CGCGGCGcGGUcGCCGUCcgccUGGg -3'
miRNA:   3'- -UGUUgGUGUCGCaCCAcCGGCAG----ACC- -5'
21480 3' -56.7 NC_004812.1 + 124720 0.67 0.866417
Target:  5'- uCGACCGCGG-GUGGgaggcgcUGGCCGgg-GGg -3'
miRNA:   3'- uGUUGGUGUCgCACC-------ACCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 113009 0.67 0.867157
Target:  5'- ---cCCGCGGCGUGGgcuaucggcUGGCCGgcgUUGa -3'
miRNA:   3'- uguuGGUGUCGCACC---------ACCGGCa--GACc -5'
21480 3' -56.7 NC_004812.1 + 26029 0.67 0.85197
Target:  5'- gACGGCgACGGCG-GGgccggGGCCGg--GGg -3'
miRNA:   3'- -UGUUGgUGUCGCaCCa----CCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 1424 0.67 0.859664
Target:  5'- gGCGGCCGCGGgGaGG-GGCCGg--GGc -3'
miRNA:   3'- -UGUUGGUGUCgCaCCaCCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 37195 0.67 0.827743
Target:  5'- uGCAGCgucaGCAGCGcGG-GGCCGUCc-- -3'
miRNA:   3'- -UGUUGg---UGUCGCaCCaCCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 48125 0.67 0.827743
Target:  5'- gACGGCggaGgAGCG-GGUGGCCGUCc-- -3'
miRNA:   3'- -UGUUGg--UgUCGCaCCACCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 58668 0.67 0.827743
Target:  5'- -gAACCACuGCG-GGUugGGCUGgCUGGa -3'
miRNA:   3'- ugUUGGUGuCGCaCCA--CCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 104704 0.67 0.827743
Target:  5'- cGCcGCCAUgcgGGCGUGcGUGGCCGcCa-- -3'
miRNA:   3'- -UGuUGGUG---UCGCAC-CACCGGCaGacc -5'
21480 3' -56.7 NC_004812.1 + 73319 0.67 0.836003
Target:  5'- cACGACCACAGCGcGGccaGcGCCGcgCUcGGa -3'
miRNA:   3'- -UGUUGGUGUCGCaCCa--C-CGGCa-GA-CC- -5'
21480 3' -56.7 NC_004812.1 + 98410 0.67 0.836003
Target:  5'- gGCGgcGCCGCAGCGUcucGGUgcggcGGCCG-CgGGg -3'
miRNA:   3'- -UGU--UGGUGUCGCA---CCA-----CCGGCaGaCC- -5'
21480 3' -56.7 NC_004812.1 + 74852 0.67 0.844081
Target:  5'- cGCGGCCucCAGCGagcgccgcagGGcGGCCGUCcGGc -3'
miRNA:   3'- -UGUUGGu-GUCGCa---------CCaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 27361 0.67 0.85197
Target:  5'- cGCGGCC-CAGCcaGGUGGCCGa---- -3'
miRNA:   3'- -UGUUGGuGUCGcaCCACCGGCagacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.