miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 59229 0.69 0.736882
Target:  5'- aGCGA-CAUGGCGUGGUuggccuccgugaGGCCGUCgcGGa -3'
miRNA:   3'- -UGUUgGUGUCGCACCA------------CCGGCAGa-CC- -5'
21480 3' -56.7 NC_004812.1 + 35936 0.69 0.731058
Target:  5'- gGCGGCCGCuugaacugcacgucGC-UGGUGGCCGUCg-- -3'
miRNA:   3'- -UGUUGGUGu-------------CGcACCACCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 90000 0.68 0.774794
Target:  5'- gACGGCCugGGCGUGGagcGGCCcgcgGGc -3'
miRNA:   3'- -UGUUGGugUCGCACCa--CCGGcagaCC- -5'
21480 3' -56.7 NC_004812.1 + 75822 0.68 0.774794
Target:  5'- aGCGGCgGCAGCGccgGGUGGUgcugGUCUcGGg -3'
miRNA:   3'- -UGUUGgUGUCGCa--CCACCGg---CAGA-CC- -5'
21480 3' -56.7 NC_004812.1 + 129560 0.68 0.793035
Target:  5'- gGCGGCCGCGGCGUcGUcGUCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCAcCAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 101170 0.68 0.819308
Target:  5'- gACGGCCGCGGCG-GGgacGGUCGU--GGa -3'
miRNA:   3'- -UGUUGGUGUCGCaCCa--CCGGCAgaCC- -5'
21480 3' -56.7 NC_004812.1 + 11308 0.68 0.819308
Target:  5'- cGCGgggcGCCGCGGgGcGGgGGCCGgugggCUGGg -3'
miRNA:   3'- -UGU----UGGUGUCgCaCCaCCGGCa----GACC- -5'
21480 3' -56.7 NC_004812.1 + 67701 0.68 0.801947
Target:  5'- cCGAgCAgGGCGcgGGUGGCgGaCUGGg -3'
miRNA:   3'- uGUUgGUgUCGCa-CCACCGgCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 74718 0.68 0.810707
Target:  5'- -gAGCCcCAGCaccguguUGGUcGCCGUCUGGa -3'
miRNA:   3'- ugUUGGuGUCGc------ACCAcCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 106154 0.68 0.819308
Target:  5'- aGCGGCU-CGGCGUccGGcugGGCCGUCgGGc -3'
miRNA:   3'- -UGUUGGuGUCGCA--CCa--CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 153585 0.68 0.783982
Target:  5'- gGCAACCGCcucuGCG-GGcccgacacGGCCGcCUGGg -3'
miRNA:   3'- -UGUUGGUGu---CGCaCCa-------CCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 79615 0.68 0.774794
Target:  5'- cACGGCCGCGGUGagGGcGGCCGUg--- -3'
miRNA:   3'- -UGUUGGUGUCGCa-CCaCCGGCAgacc -5'
21480 3' -56.7 NC_004812.1 + 4051 0.68 0.793035
Target:  5'- gGCGGCCGCGGCGUcGUcGUCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCAcCAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 142004 0.68 0.801947
Target:  5'- cCGGCUGCAGUGguuccgGGacgUGGCCGcgCUGGa -3'
miRNA:   3'- uGUUGGUGUCGCa-----CC---ACCGGCa-GACC- -5'
21480 3' -56.7 NC_004812.1 + 146846 0.68 0.801947
Target:  5'- cGCGGCCGcCGGCGcgccgcgggccUGGUGGCgGUCcccucccgGGg -3'
miRNA:   3'- -UGUUGGU-GUCGC-----------ACCACCGgCAGa-------CC- -5'
21480 3' -56.7 NC_004812.1 + 28076 0.68 0.783982
Target:  5'- gGCAACCGCcucuGCG-GGcccgacacGGCCGcCUGGg -3'
miRNA:   3'- -UGUUGGUGu---CGCaCCa-------CCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 126932 0.67 0.859664
Target:  5'- gGCGGCCGCGGgGaGG-GGCCGg--GGc -3'
miRNA:   3'- -UGUUGGUGUCgCaCCaCCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 104868 0.67 0.859664
Target:  5'- gGCGGCCGCGGCGgucgucGUcGCCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCac----CAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 151538 0.67 0.85197
Target:  5'- gACGGCgACGGCG-GGgccggGGCCGg--GGg -3'
miRNA:   3'- -UGUUGgUGUCGCaCCa----CCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 130731 0.67 0.859664
Target:  5'- -aGGCCgaGCGGCGUcGGccucgcGGCCGUCgGGg -3'
miRNA:   3'- ugUUGG--UGUCGCA-CCa-----CCGGCAGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.