Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21480 | 3' | -56.7 | NC_004812.1 | + | 73319 | 0.67 | 0.836003 |
Target: 5'- cACGACCACAGCGcGGccaGcGCCGcgCUcGGa -3' miRNA: 3'- -UGUUGGUGUCGCaCCa--C-CGGCa-GA-CC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 104868 | 0.67 | 0.859664 |
Target: 5'- gGCGGCCGCGGCGgucgucGUcGCCGUCg-- -3' miRNA: 3'- -UGUUGGUGUCGCac----CAcCGGCAGacc -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 10960 | 0.66 | 0.881514 |
Target: 5'- uCAuCCGC-GCGgaaggugagaGGUGGCCGUgCUGGc -3' miRNA: 3'- uGUuGGUGuCGCa---------CCACCGGCA-GACC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 69871 | 0.66 | 0.888369 |
Target: 5'- uCGGCC-CGGCGcUGGUcGCCGUCg-- -3' miRNA: 3'- uGUUGGuGUCGC-ACCAcCGGCAGacc -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 118088 | 0.66 | 0.888369 |
Target: 5'- -gGACCACcGCGUGcuccGGCUGUCccUGGa -3' miRNA: 3'- ugUUGGUGuCGCACca--CCGGCAG--ACC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 86612 | 0.66 | 0.892375 |
Target: 5'- -gGGCCGCGGCGcgguugcccagcgGGUGGUCGUg-GGu -3' miRNA: 3'- ugUUGGUGUCGCa------------CCACCGGCAgaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 81245 | 0.66 | 0.895002 |
Target: 5'- cGCGugCACcucGCGgaggacGGUGGCCaucacguugccGUCUGGc -3' miRNA: 3'- -UGUugGUGu--CGCa-----CCACCGG-----------CAGACC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 58929 | 0.66 | 0.90141 |
Target: 5'- -aAGCCGgucuCGGCG-GG-GGCCGcCUGGc -3' miRNA: 3'- ugUUGGU----GUCGCaCCaCCGGCaGACC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 68125 | 0.66 | 0.90141 |
Target: 5'- gGCGGCCGCGGCGacgaagGGCCcgguGUCgGGg -3' miRNA: 3'- -UGUUGGUGUCGCacca--CCGG----CAGaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 107186 | 0.66 | 0.90141 |
Target: 5'- gGCGAgCGgAGCGUGGcGGUCGggcgGGg -3' miRNA: 3'- -UGUUgGUgUCGCACCaCCGGCaga-CC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 123128 | 0.66 | 0.90141 |
Target: 5'- gGCGGCgGCGGCGUcGGaggcggGGUCGUCg-- -3' miRNA: 3'- -UGUUGgUGUCGCA-CCa-----CCGGCAGacc -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 138713 | 0.66 | 0.90141 |
Target: 5'- gACGACCGCGGCGcGGcgGGCCcgc-GGc -3' miRNA: 3'- -UGUUGGUGUCGCaCCa-CCGGcagaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 99397 | 0.66 | 0.888369 |
Target: 5'- gGC-GCUGCGGCGgcUGG-GGUCGUCgGGg -3' miRNA: 3'- -UGuUGGUGUCGC--ACCaCCGGCAGaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 110910 | 0.66 | 0.895002 |
Target: 5'- gACAACCgggcccugcuGCAGC-UGGU-GCCGUCccgGGg -3' miRNA: 3'- -UGUUGG----------UGUCGcACCAcCGGCAGa--CC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 22731 | 0.66 | 0.893035 |
Target: 5'- gGCGACgagcccgucucgcgCGCGGCGUGGUGGaccuggugCGUCcaggUGGg -3' miRNA: 3'- -UGUUG--------------GUGUCGCACCACCg-------GCAG----ACC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 115588 | 0.66 | 0.888369 |
Target: 5'- gGCuuCCGCGGCGggcGGcgGGCUGUaggGGg -3' miRNA: 3'- -UGuuGGUGUCGCa--CCa-CCGGCAga-CC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 109142 | 0.66 | 0.881514 |
Target: 5'- cCGGCgGCGGCGacGGaccGGCCGUCgGGc -3' miRNA: 3'- uGUUGgUGUCGCa-CCa--CCGGCAGaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 35600 | 0.66 | 0.881514 |
Target: 5'- gGCGACCGCcgaGGCGUGcGccgGGCCGaacgCgGGg -3' miRNA: 3'- -UGUUGGUG---UCGCAC-Ca--CCGGCa---GaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 102926 | 0.66 | 0.880816 |
Target: 5'- gGCGGCCGCGaacgagagccGCGggGGUGGCgggggggCGUCgGGg -3' miRNA: 3'- -UGUUGGUGU----------CGCa-CCACCG-------GCAGaCC- -5' |
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21480 | 3' | -56.7 | NC_004812.1 | + | 154029 | 0.66 | 0.90141 |
Target: 5'- gGCGGCgGCGGCGUcGGaggcggGGUCGUCg-- -3' miRNA: 3'- -UGUUGgUGUCGCA-CCa-----CCGGCAGacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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