miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 71957 1.09 0.002632
Target:  5'- aACAACCACAGCGUGGUGGCCGUCUGGc -3'
miRNA:   3'- -UGUUGGUGUCGCACCACCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 56178 0.76 0.350385
Target:  5'- uACAGCCcgGGCGUGGUGGCCuggaagacGUCgUGGg -3'
miRNA:   3'- -UGUUGGugUCGCACCACCGG--------CAG-ACC- -5'
21480 3' -56.7 NC_004812.1 + 122185 0.75 0.398864
Target:  5'- -gGGCCugGGUcugGUGGgcgGGCUGUCUGGg -3'
miRNA:   3'- ugUUGGugUCG---CACCa--CCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 153086 0.75 0.398864
Target:  5'- -gGGCCugGGUcugGUGGgcgGGCUGUCUGGg -3'
miRNA:   3'- ugUUGGugUCG---CACCa--CCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 85602 0.73 0.497992
Target:  5'- cCGGCCccGCGGCGgcgagcgGGCCGUCUGGa -3'
miRNA:   3'- uGUUGG--UGUCGCacca---CCGGCAGACC- -5'
21480 3' -56.7 NC_004812.1 + 106438 0.72 0.556493
Target:  5'- -aGAUCGCGGCGcUGGcGGCCGUCUc- -3'
miRNA:   3'- ugUUGGUGUCGC-ACCaCCGGCAGAcc -5'
21480 3' -56.7 NC_004812.1 + 107207 0.72 0.57646
Target:  5'- -gGGCCACGGCGcg--GGCCGcCUGGg -3'
miRNA:   3'- ugUUGGUGUCGCaccaCCGGCaGACC- -5'
21480 3' -56.7 NC_004812.1 + 13417 0.72 0.596584
Target:  5'- gACGGCCGgAG-G-GGUGGCCGUCguuucgGGg -3'
miRNA:   3'- -UGUUGGUgUCgCaCCACCGGCAGa-----CC- -5'
21480 3' -56.7 NC_004812.1 + 121865 0.71 0.606687
Target:  5'- gGCGACCACGGCGcagaGG-GGCgGggcCUGGg -3'
miRNA:   3'- -UGUUGGUGUCGCa---CCaCCGgCa--GACC- -5'
21480 3' -56.7 NC_004812.1 + 152766 0.71 0.606687
Target:  5'- gGCGACCACGGCGcagaGG-GGCgGggcCUGGg -3'
miRNA:   3'- -UGUUGGUGUCGCa---CCaCCGgCa--GACC- -5'
21480 3' -56.7 NC_004812.1 + 109705 0.71 0.647213
Target:  5'- cACcGCCGCcGCGcUGGcGGCCGcgCUGGg -3'
miRNA:   3'- -UGuUGGUGuCGC-ACCaCCGGCa-GACC- -5'
21480 3' -56.7 NC_004812.1 + 48293 0.71 0.647213
Target:  5'- gACGGCCGCGGC--GGUGGCCGa--GGa -3'
miRNA:   3'- -UGUUGGUGUCGcaCCACCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 120054 0.71 0.647213
Target:  5'- -gGACCugGGCGUGGgguacacGGCCGcCgUGGc -3'
miRNA:   3'- ugUUGGugUCGCACCa------CCGGCaG-ACC- -5'
21480 3' -56.7 NC_004812.1 + 46917 0.7 0.667437
Target:  5'- cGCGGCgGCGGUgGUGGUcuuccccaGGCCGUgUGGc -3'
miRNA:   3'- -UGUUGgUGUCG-CACCA--------CCGGCAgACC- -5'
21480 3' -56.7 NC_004812.1 + 137046 0.7 0.67751
Target:  5'- -uGGCC--GGgGUGGUGGCCGgcCUGGg -3'
miRNA:   3'- ugUUGGugUCgCACCACCGGCa-GACC- -5'
21480 3' -56.7 NC_004812.1 + 117383 0.7 0.67751
Target:  5'- -uGGCCACGcGCGUGGcccgGGCCacgCUGGu -3'
miRNA:   3'- ugUUGGUGU-CGCACCa---CCGGca-GACC- -5'
21480 3' -56.7 NC_004812.1 + 41725 0.7 0.67751
Target:  5'- cCAGCCcCGGCGUGGUGGUgaCGg--GGg -3'
miRNA:   3'- uGUUGGuGUCGCACCACCG--GCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 11517 0.7 0.717354
Target:  5'- -aAGCC-CAGCGUGG-GGCUcagCUGGa -3'
miRNA:   3'- ugUUGGuGUCGCACCaCCGGca-GACC- -5'
21480 3' -56.7 NC_004812.1 + 35936 0.69 0.731058
Target:  5'- gGCGGCCGCuugaacugcacgucGC-UGGUGGCCGUCg-- -3'
miRNA:   3'- -UGUUGGUGu-------------CGcACCACCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 59229 0.69 0.736882
Target:  5'- aGCGA-CAUGGCGUGGUuggccuccgugaGGCCGUCgcGGa -3'
miRNA:   3'- -UGUUgGUGUCGCACCA------------CCGGCAGa-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.