miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21480 3' -56.7 NC_004812.1 + 103767 0.67 0.867157
Target:  5'- -gGGCCGCggucgGGCGU-GUGGCCGUCc-- -3'
miRNA:   3'- ugUUGGUG-----UCGCAcCACCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 76744 0.67 0.867157
Target:  5'- cGCGGCCGCcGUGUc--GGCCGUCgGGu -3'
miRNA:   3'- -UGUUGGUGuCGCAccaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 99236 0.67 0.867157
Target:  5'- uCGGCgGgGGCG-GG-GGCCGUCcGGg -3'
miRNA:   3'- uGUUGgUgUCGCaCCaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 113009 0.67 0.867157
Target:  5'- ---cCCGCGGCGUGGgcuaucggcUGGCCGgcgUUGa -3'
miRNA:   3'- uguuGGUGUCGCACC---------ACCGGCa--GACc -5'
21480 3' -56.7 NC_004812.1 + 102005 0.67 0.867157
Target:  5'- cGCGACuCGCGGCGccgccgcgagGGUGGCuCGUCc-- -3'
miRNA:   3'- -UGUUG-GUGUCGCa---------CCACCG-GCAGacc -5'
21480 3' -56.7 NC_004812.1 + 124720 0.67 0.866417
Target:  5'- uCGACCGCGG-GUGGgaggcgcUGGCCGgg-GGg -3'
miRNA:   3'- uGUUGGUGUCgCACC-------ACCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 1424 0.67 0.859664
Target:  5'- gGCGGCCGCGGgGaGG-GGCCGg--GGc -3'
miRNA:   3'- -UGUUGGUGUCgCaCCaCCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 141783 0.67 0.859664
Target:  5'- aACGGCCGC-GCGgggGGgcgGGCCGcgCgGGg -3'
miRNA:   3'- -UGUUGGUGuCGCa--CCa--CCGGCa-GaCC- -5'
21480 3' -56.7 NC_004812.1 + 46822 0.67 0.859664
Target:  5'- gGCGGCCGuCGGCccGGUcgagggGGCCGUCacgGGg -3'
miRNA:   3'- -UGUUGGU-GUCGcaCCA------CCGGCAGa--CC- -5'
21480 3' -56.7 NC_004812.1 + 130731 0.67 0.859664
Target:  5'- -aGGCCgaGCGGCGUcGGccucgcGGCCGUCgGGg -3'
miRNA:   3'- ugUUGG--UGUCGCA-CCa-----CCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 144297 0.67 0.859664
Target:  5'- gGCGGCCu--GCG-GGUcgcugaGGCCGUCgUGGg -3'
miRNA:   3'- -UGUUGGuguCGCaCCA------CCGGCAG-ACC- -5'
21480 3' -56.7 NC_004812.1 + 126932 0.67 0.859664
Target:  5'- gGCGGCCGCGGgGaGG-GGCCGg--GGc -3'
miRNA:   3'- -UGUUGGUGUCgCaCCaCCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 104868 0.67 0.859664
Target:  5'- gGCGGCCGCGGCGgucgucGUcGCCGUCg-- -3'
miRNA:   3'- -UGUUGGUGUCGCac----CAcCGGCAGacc -5'
21480 3' -56.7 NC_004812.1 + 59242 0.67 0.858904
Target:  5'- cGCGACCGCGGCGagcugcuUGGcGGCgGUgCgcgGGa -3'
miRNA:   3'- -UGUUGGUGUCGC-------ACCaCCGgCA-Ga--CC- -5'
21480 3' -56.7 NC_004812.1 + 27361 0.67 0.85197
Target:  5'- cGCGGCC-CAGCcaGGUGGCCGa---- -3'
miRNA:   3'- -UGUUGGuGUCGcaCCACCGGCagacc -5'
21480 3' -56.7 NC_004812.1 + 76304 0.67 0.85197
Target:  5'- aGCAG-CGCGGCGcGGUcGCCGUCcgccUGGg -3'
miRNA:   3'- -UGUUgGUGUCGCaCCAcCGGCAG----ACC- -5'
21480 3' -56.7 NC_004812.1 + 26029 0.67 0.85197
Target:  5'- gACGGCgACGGCG-GGgccggGGCCGg--GGg -3'
miRNA:   3'- -UGUUGgUGUCGCaCCa----CCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 151538 0.67 0.85197
Target:  5'- gACGGCgACGGCG-GGgccggGGCCGg--GGg -3'
miRNA:   3'- -UGUUGgUGUCGCaCCa----CCGGCagaCC- -5'
21480 3' -56.7 NC_004812.1 + 74852 0.67 0.844081
Target:  5'- cGCGGCCucCAGCGagcgccgcagGGcGGCCGUCcGGc -3'
miRNA:   3'- -UGUUGGu-GUCGCa---------CCaCCGGCAGaCC- -5'
21480 3' -56.7 NC_004812.1 + 137943 0.67 0.844081
Target:  5'- -aGGCgGCGGgcgcCGUGGacaUGGCCGUCUGcGg -3'
miRNA:   3'- ugUUGgUGUC----GCACC---ACCGGCAGAC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.